miRNA display CGI


Results 41 - 60 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12880 5' -63.2 NC_003387.1 + 18216 0.66 0.349332
Target:  5'- gGAUCG-CGGcGCCGCaGCGGCGGgCGu -3'
miRNA:   3'- gCUAGUgGCCcCGGUGgCGCCGUC-GC- -5'
12880 5' -63.2 NC_003387.1 + 18290 0.7 0.17214
Target:  5'- uCGAccagCGCCGacccGGCCGCgGCGGUGGCGc -3'
miRNA:   3'- -GCUa---GUGGCc---CCGGUGgCGCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 18392 0.69 0.211001
Target:  5'- uCGAUCgGCUGcgacGGGUCgGCCGCGGgCAGCGc -3'
miRNA:   3'- -GCUAG-UGGC----CCCGG-UGGCGCC-GUCGC- -5'
12880 5' -63.2 NC_003387.1 + 18497 0.72 0.127139
Target:  5'- cCGAggGCCugcagcaugcucucGGGCCGCCGCGGUGGCa -3'
miRNA:   3'- -GCUagUGGc-------------CCCGGUGGCGCCGUCGc -5'
12880 5' -63.2 NC_003387.1 + 18685 0.7 0.190703
Target:  5'- uCGAguaCACCGGGGUggggCGCCGUgccgaGGCAGUa -3'
miRNA:   3'- -GCUa--GUGGCCCCG----GUGGCG-----CCGUCGc -5'
12880 5' -63.2 NC_003387.1 + 18827 0.67 0.290056
Target:  5'- aGAUCGCCGacGGGUCGCCGCccauguGCAuGUGc -3'
miRNA:   3'- gCUAGUGGC--CCCGGUGGCGc-----CGU-CGC- -5'
12880 5' -63.2 NC_003387.1 + 19058 0.68 0.256558
Target:  5'- uCGAccaUCGCCGccaGGGCCACgGUGaugcccuGCAGCGu -3'
miRNA:   3'- -GCU---AGUGGC---CCCGGUGgCGC-------CGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 19240 0.66 0.311315
Target:  5'- gCGAUCG-CGGGcGCCgACCGCcuCGGCGa -3'
miRNA:   3'- -GCUAGUgGCCC-CGG-UGGCGccGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 19474 0.72 0.132628
Target:  5'- uGggCGCCGaGGCCACCGCGG--GCGa -3'
miRNA:   3'- gCuaGUGGCcCCGGUGGCGCCguCGC- -5'
12880 5' -63.2 NC_003387.1 + 19971 0.66 0.326134
Target:  5'- uCGAcuUCACaacgcugcccuCGGGGCCGuucuCCGCGGCGcCGu -3'
miRNA:   3'- -GCU--AGUG-----------GCCCCGGU----GGCGCCGUcGC- -5'
12880 5' -63.2 NC_003387.1 + 19988 0.71 0.151216
Target:  5'- cCGaAUCGCCGaGGCCACCGCGcCGuGCGc -3'
miRNA:   3'- -GC-UAGUGGCcCCGGUGGCGCcGU-CGC- -5'
12880 5' -63.2 NC_003387.1 + 20106 0.66 0.326134
Target:  5'- uGAUCGCCaGGuaCACCGaCGGCAcCa -3'
miRNA:   3'- gCUAGUGGcCCcgGUGGC-GCCGUcGc -5'
12880 5' -63.2 NC_003387.1 + 21683 0.66 0.349332
Target:  5'- uCGG-CGCCGGugccgugcuGGCCGCCGCccCGGCGc -3'
miRNA:   3'- -GCUaGUGGCC---------CCGGUGGCGccGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 21687 0.66 0.349332
Target:  5'- cCGA-CGCCcuGGCCGCCuCGGCgAGCGc -3'
miRNA:   3'- -GCUaGUGGccCCGGUGGcGCCG-UCGC- -5'
12880 5' -63.2 NC_003387.1 + 22060 0.78 0.044637
Target:  5'- gCGAUCACCGGcaccguuGGCgACgGCGGUAGCGc -3'
miRNA:   3'- -GCUAGUGGCC-------CCGgUGgCGCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 22792 0.66 0.31866
Target:  5'- ---aCACUGGauaGGagCACCGUGGCAGCa -3'
miRNA:   3'- gcuaGUGGCC---CCg-GUGGCGCCGUCGc -5'
12880 5' -63.2 NC_003387.1 + 23279 0.79 0.039728
Target:  5'- uCGAUCGCgaggauagcgaccgCGcGGGCCGCUGCGGCGGCc -3'
miRNA:   3'- -GCUAGUG--------------GC-CCCGGUGGCGCCGUCGc -5'
12880 5' -63.2 NC_003387.1 + 23375 0.68 0.238961
Target:  5'- aGGUCGCCGaGGaugaaGCgCGCGGCGGCu -3'
miRNA:   3'- gCUAGUGGCcCCgg---UG-GCGCCGUCGc -5'
12880 5' -63.2 NC_003387.1 + 24959 0.66 0.311315
Target:  5'- gCGA-CA-CGaGGGCCuCCGCGGUGGUGu -3'
miRNA:   3'- -GCUaGUgGC-CCCGGuGGCGCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 25181 0.77 0.058987
Target:  5'- gCGGUgGCCccGGcgccGCCGCCGCGGCAGCGc -3'
miRNA:   3'- -GCUAgUGG--CCc---CGGUGGCGCCGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.