miRNA display CGI


Results 21 - 40 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12880 5' -63.2 NC_003387.1 + 45059 0.66 0.340691
Target:  5'- aGGUCGCCGagcgcgucgaGGGCCguccuggGCCGguguuCGGCGGCc -3'
miRNA:   3'- gCUAGUGGC----------CCCGG-------UGGC-----GCCGUCGc -5'
12880 5' -63.2 NC_003387.1 + 44978 0.75 0.081881
Target:  5'- gCGAUCGCCGcuGCCGCCGaGGCGGUGc -3'
miRNA:   3'- -GCUAGUGGCccCGGUGGCgCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 44260 0.69 0.216358
Target:  5'- -aAUCGCUgcggaauuGGGcGCCGCCGCaGGuCAGCGg -3'
miRNA:   3'- gcUAGUGG--------CCC-CGGUGGCG-CC-GUCGC- -5'
12880 5' -63.2 NC_003387.1 + 43697 0.67 0.289368
Target:  5'- gGAUCGCCGacGGcGCCcgccaggugcucgACgGCGGCAuGCGg -3'
miRNA:   3'- gCUAGUGGC--CC-CGG-------------UGgCGCCGU-CGC- -5'
12880 5' -63.2 NC_003387.1 + 43099 0.69 0.197605
Target:  5'- aCGggCGCCGGGuacgagcgcgacggcGCggCGCCGCGGUGGUGg -3'
miRNA:   3'- -GCuaGUGGCCC---------------CG--GUGGCGCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 42867 0.66 0.341471
Target:  5'- gGAaCACCGcGGuGCC-CgGCGGCgaGGCGa -3'
miRNA:   3'- gCUaGUGGC-CC-CGGuGgCGCCG--UCGC- -5'
12880 5' -63.2 NC_003387.1 + 42378 0.66 0.333738
Target:  5'- --cUUACCGGGGUCggccguaucgacGCCGCGGCuGa- -3'
miRNA:   3'- gcuAGUGGCCCCGG------------UGGCGCCGuCgc -5'
12880 5' -63.2 NC_003387.1 + 42032 0.76 0.06583
Target:  5'- uGA-UACCGGcGGCCACCGCcgaGGCGGCc -3'
miRNA:   3'- gCUaGUGGCC-CCGGUGGCG---CCGUCGc -5'
12880 5' -63.2 NC_003387.1 + 41974 0.75 0.073436
Target:  5'- gGAgcugCGCgCGGaGGCCGCCGCGGUgcucaAGCGg -3'
miRNA:   3'- gCUa---GUG-GCC-CCGGUGGCGCCG-----UCGC- -5'
12880 5' -63.2 NC_003387.1 + 41310 0.75 0.077549
Target:  5'- aCGAcagCACCucGGGGCCgAUCGCGGcCAGCGu -3'
miRNA:   3'- -GCUa--GUGG--CCCCGG-UGGCGCC-GUCGC- -5'
12880 5' -63.2 NC_003387.1 + 41057 0.67 0.297014
Target:  5'- gCGAUCGCCGaGGCCGCUGUcgacgcgaucgaGG-GGCGa -3'
miRNA:   3'- -GCUAGUGGCcCCGGUGGCG------------CCgUCGC- -5'
12880 5' -63.2 NC_003387.1 + 40508 0.7 0.181211
Target:  5'- gCGAcCGCCGGuGGCCcggcACCGa-GCAGCGa -3'
miRNA:   3'- -GCUaGUGGCC-CCGG----UGGCgcCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 40365 0.77 0.054312
Target:  5'- uGAUCgcgGCCGGGGCCAagggccucgaCGuCGGCGGCGa -3'
miRNA:   3'- gCUAG---UGGCCCCGGUg---------GC-GCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 40356 0.72 0.129172
Target:  5'- aGAUUGC--GGGCCGUCGCGGCGGCGu -3'
miRNA:   3'- gCUAGUGgcCCCGGUGGCGCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 40254 0.66 0.31866
Target:  5'- uCGGaCGCCaGGcccgcggccaGGCCGCCGCcagcgaaccucGGCAGCGc -3'
miRNA:   3'- -GCUaGUGG-CC----------CCGGUGGCG-----------CCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 39313 0.66 0.333738
Target:  5'- cCGAcaaCGgCGaGGGCgugcugugauCACCGCGGCGGCc -3'
miRNA:   3'- -GCUa--GUgGC-CCCG----------GUGGCGCCGUCGc -5'
12880 5' -63.2 NC_003387.1 + 39094 0.66 0.313505
Target:  5'- aCGGUgGCCGGGuugaacucacccgguGCCAgCGCGgggcugccagacuGCGGCGa -3'
miRNA:   3'- -GCUAgUGGCCC---------------CGGUgGCGC-------------CGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 37779 0.69 0.200629
Target:  5'- cCGAUacCACCGGGGaugCGCCGCugcgccGGUAGCc -3'
miRNA:   3'- -GCUA--GUGGCCCCg--GUGGCG------CCGUCGc -5'
12880 5' -63.2 NC_003387.1 + 37337 0.65 0.354911
Target:  5'- aCGAgccccCGCCGcGGGCugcgcuaucugcggCACCugucggGCGGCGGCGc -3'
miRNA:   3'- -GCUa----GUGGC-CCCG--------------GUGG------CGCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 34414 0.76 0.069533
Target:  5'- -cGUUGCCGGGcGCCACCGCcGCGGCc -3'
miRNA:   3'- gcUAGUGGCCC-CGGUGGCGcCGUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.