miRNA display CGI


Results 41 - 60 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12880 5' -63.2 NC_003387.1 + 34197 0.74 0.086444
Target:  5'- gCGAaCGCCuGcGuGCCACCGCGGCGGCc -3'
miRNA:   3'- -GCUaGUGGcC-C-CGGUGGCGCCGUCGc -5'
12880 5' -63.2 NC_003387.1 + 33958 0.67 0.276526
Target:  5'- aGcUUGCCGGGGUCggguaugaGCUGCcGCAGCGg -3'
miRNA:   3'- gCuAGUGGCCCCGG--------UGGCGcCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 32604 0.73 0.104391
Target:  5'- uCGAUCcuGCUcGGGCuCGCCGCGGgGGCGc -3'
miRNA:   3'- -GCUAG--UGGcCCCG-GUGGCGCCgUCGC- -5'
12880 5' -63.2 NC_003387.1 + 31017 0.67 0.269952
Target:  5'- aGGUCGgCGcGGGCCgcgcucGCCGaGGCGGCc -3'
miRNA:   3'- gCUAGUgGC-CCCGG------UGGCgCCGUCGc -5'
12880 5' -63.2 NC_003387.1 + 31006 0.67 0.3041
Target:  5'- aGGUCAggaUC-GGGCCgagcgugcGCCGgGGCGGCGg -3'
miRNA:   3'- gCUAGU---GGcCCCGG--------UGGCgCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 30925 0.67 0.289368
Target:  5'- uCGcUCGCCGaGcuGCCGCCGCGGUcaacuugAGCGc -3'
miRNA:   3'- -GCuAGUGGC-Cc-CGGUGGCGCCG-------UCGC- -5'
12880 5' -63.2 NC_003387.1 + 30881 0.66 0.311315
Target:  5'- gCGGU-AgCGGGGCCAUCGCcGGgaaAGCGu -3'
miRNA:   3'- -GCUAgUgGCCCCGGUGGCG-CCg--UCGC- -5'
12880 5' -63.2 NC_003387.1 + 30613 0.69 0.205758
Target:  5'- ---cCGCCaGGGCCGCCGgGGaUGGCGc -3'
miRNA:   3'- gcuaGUGGcCCCGGUGGCgCC-GUCGC- -5'
12880 5' -63.2 NC_003387.1 + 30503 0.67 0.276526
Target:  5'- -aAUUGCCGGGGCCgggGCCGCGaG-AGCc -3'
miRNA:   3'- gcUAGUGGCCCCGG---UGGCGC-CgUCGc -5'
12880 5' -63.2 NC_003387.1 + 30268 0.67 0.290056
Target:  5'- uCGAgUACCGcGaGGCCaacGCCGCGGCccGCGc -3'
miRNA:   3'- -GCUaGUGGC-C-CCGG---UGGCGCCGu-CGC- -5'
12880 5' -63.2 NC_003387.1 + 30251 0.69 0.216358
Target:  5'- gGGUCGUCGGGGUCGgCGCcggggucgGGCAGCc -3'
miRNA:   3'- gCUAGUGGCCCCGGUgGCG--------CCGUCGc -5'
12880 5' -63.2 NC_003387.1 + 30061 0.67 0.276526
Target:  5'- aCGAgcgCGCCcugacGGCCGCCGgGGCgAGCa -3'
miRNA:   3'- -GCUa--GUGGcc---CCGGUGGCgCCG-UCGc -5'
12880 5' -63.2 NC_003387.1 + 29762 0.73 0.116167
Target:  5'- aCGAUgACCGGGGCgCcccaCGCGGuCAGCu -3'
miRNA:   3'- -GCUAgUGGCCCCG-Gug--GCGCC-GUCGc -5'
12880 5' -63.2 NC_003387.1 + 29398 0.71 0.147318
Target:  5'- uCGAUCucgcccGCCGGGcgcaggaggagGCCGCCGCaGCGGCc -3'
miRNA:   3'- -GCUAG------UGGCCC-----------CGGUGGCGcCGUCGc -5'
12880 5' -63.2 NC_003387.1 + 28864 0.78 0.049998
Target:  5'- gGGUCGCCGGuccacGGCCccgACUGCGGCGGCu -3'
miRNA:   3'- gCUAGUGGCC-----CCGG---UGGCGCCGUCGc -5'
12880 5' -63.2 NC_003387.1 + 28430 0.66 0.333738
Target:  5'- uGAUCACgugauCGGcGcGCaCGCCGaGGCGGCGg -3'
miRNA:   3'- gCUAGUG-----GCC-C-CG-GUGGCgCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 28407 0.77 0.055829
Target:  5'- aCGAUCGCCGagcagacccGGCUGCUGCGGCGGCu -3'
miRNA:   3'- -GCUAGUGGCc--------CCGGUGGCGCCGUCGc -5'
12880 5' -63.2 NC_003387.1 + 27547 0.77 0.051397
Target:  5'- gCGG-CGCCGGGGCCACCGCGcCgAGCc -3'
miRNA:   3'- -GCUaGUGGCCCCGGUGGCGCcG-UCGc -5'
12880 5' -63.2 NC_003387.1 + 26929 0.66 0.326134
Target:  5'- ---cCACCGaGGCCGCCgaGCGGCcgagaaugucgAGCGg -3'
miRNA:   3'- gcuaGUGGCcCCGGUGG--CGCCG-----------UCGC- -5'
12880 5' -63.2 NC_003387.1 + 26573 0.66 0.311315
Target:  5'- uGAcUCcUCGGGGUCagGCCGCGcgaGCGGCGa -3'
miRNA:   3'- gCU-AGuGGCCCCGG--UGGCGC---CGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.