miRNA display CGI


Results 21 - 40 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12880 5' -63.2 NC_003387.1 + 1666 0.7 0.185904
Target:  5'- uCGAggaGgUGuGGGCCgguaccgacACCGCGGCGGCGg -3'
miRNA:   3'- -GCUag-UgGC-CCCGG---------UGGCGCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 40508 0.7 0.181211
Target:  5'- gCGAcCGCCGGuGGCCcggcACCGa-GCAGCGa -3'
miRNA:   3'- -GCUaGUGGCC-CCGG----UGGCgcCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 32604 0.73 0.104391
Target:  5'- uCGAUCcuGCUcGGGCuCGCCGCGGgGGCGc -3'
miRNA:   3'- -GCUAG--UGGcCCCG-GUGGCGCCgUCGC- -5'
12880 5' -63.2 NC_003387.1 + 40365 0.77 0.054312
Target:  5'- uGAUCgcgGCCGGGGCCAagggccucgaCGuCGGCGGCGa -3'
miRNA:   3'- gCUAG---UGGCCCCGGUg---------GC-GCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 30268 0.67 0.290056
Target:  5'- uCGAgUACCGcGaGGCCaacGCCGCGGCccGCGc -3'
miRNA:   3'- -GCUaGUGGC-C-CCGG---UGGCGCCGu-CGC- -5'
12880 5' -63.2 NC_003387.1 + 17150 0.68 0.247327
Target:  5'- -uGUCACCGGcGGcCCgcgcugagcuggugcGCCGCcugGGCGGCGa -3'
miRNA:   3'- gcUAGUGGCC-CC-GG---------------UGGCG---CCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 18290 0.7 0.17214
Target:  5'- uCGAccagCGCCGacccGGCCGCgGCGGUGGCGc -3'
miRNA:   3'- -GCUa---GUGGCc---CCGGUGgCGCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 13622 0.78 0.04986
Target:  5'- uGG-CACCGGgugaguucaacccGGCCACCGuCGGCGGCGg -3'
miRNA:   3'- gCUaGUGGCC-------------CCGGUGGC-GCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 46935 0.69 0.205758
Target:  5'- cCGggCACCGaGGuGUCGauCCGCGGCgAGCGc -3'
miRNA:   3'- -GCuaGUGGC-CC-CGGU--GGCGCCG-UCGC- -5'
12880 5' -63.2 NC_003387.1 + 628 0.78 0.046017
Target:  5'- gCGAgggCAgCGucGCCGCCGCGGCAGCGa -3'
miRNA:   3'- -GCUa--GUgGCccCGGUGGCGCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 48788 0.7 0.17214
Target:  5'- aGcUCGCCGcuGaUCGCCGCGGCGGCGg -3'
miRNA:   3'- gCuAGUGGCccC-GGUGGCGCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 18685 0.7 0.190703
Target:  5'- uCGAguaCACCGGGGUggggCGCCGUgccgaGGCAGUa -3'
miRNA:   3'- -GCUa--GUGGCCCCG----GUGGCG-----CCGUCGc -5'
12880 5' -63.2 NC_003387.1 + 10609 0.71 0.147318
Target:  5'- aCGGUCGCCucGGUCaugcaggacgcgACCGCGGCGGUGa -3'
miRNA:   3'- -GCUAGUGGccCCGG------------UGGCGCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 7308 0.73 0.116167
Target:  5'- --cUCGCCGGGGCCGuacCUGuCGGCuGCGc -3'
miRNA:   3'- gcuAGUGGCCCCGGU---GGC-GCCGuCGC- -5'
12880 5' -63.2 NC_003387.1 + 44978 0.75 0.081881
Target:  5'- gCGAUCGCCGcuGCCGCCGaGGCGGUGc -3'
miRNA:   3'- -GCUAGUGGCccCGGUGGCgCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 28407 0.77 0.055829
Target:  5'- aCGAUCGCCGagcagacccGGCUGCUGCGGCGGCu -3'
miRNA:   3'- -GCUAGUGGCc--------CCGGUGGCGCCGUCGc -5'
12880 5' -63.2 NC_003387.1 + 48170 0.66 0.316443
Target:  5'- gCGGUCGCgcaGGcgcaGGCCcgcaaggugcccgcACCgGCGGCGGCGg -3'
miRNA:   3'- -GCUAGUGg--CC----CCGG--------------UGG-CGCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 41057 0.67 0.297014
Target:  5'- gCGAUCGCCGaGGCCGCUGUcgacgcgaucgaGG-GGCGa -3'
miRNA:   3'- -GCUAGUGGCcCCGGUGGCG------------CCgUCGC- -5'
12880 5' -63.2 NC_003387.1 + 2527 0.68 0.263505
Target:  5'- uGAgggGCCGGuguuccgcacgcGGUCGCCGCGGCAGa- -3'
miRNA:   3'- gCUag-UGGCC------------CCGGUGGCGCCGUCgc -5'
12880 5' -63.2 NC_003387.1 + 7177 0.68 0.250986
Target:  5'- ---aCACCGGGGCCGaucaagcggGUGGUGGCGu -3'
miRNA:   3'- gcuaGUGGCCCCGGUgg-------CGCCGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.