miRNA display CGI


Results 41 - 60 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12880 5' -63.2 NC_003387.1 + 45863 0.68 0.250986
Target:  5'- gCGAgcugCugCGGcuGCgCGCCGCGGCcgAGCGg -3'
miRNA:   3'- -GCUa---GugGCCc-CG-GUGGCGCCG--UCGC- -5'
12880 5' -63.2 NC_003387.1 + 41057 0.67 0.297014
Target:  5'- gCGAUCGCCGaGGCCGCUGUcgacgcgaucgaGG-GGCGa -3'
miRNA:   3'- -GCUAGUGGCcCCGGUGGCG------------CCgUCGC- -5'
12880 5' -63.2 NC_003387.1 + 46935 0.69 0.205758
Target:  5'- cCGggCACCGaGGuGUCGauCCGCGGCgAGCGc -3'
miRNA:   3'- -GCuaGUGGC-CC-CGGU--GGCGCCG-UCGC- -5'
12880 5' -63.2 NC_003387.1 + 1666 0.7 0.185904
Target:  5'- uCGAggaGgUGuGGGCCgguaccgacACCGCGGCGGCGg -3'
miRNA:   3'- -GCUag-UgGC-CCCGG---------UGGCGCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 40508 0.7 0.181211
Target:  5'- gCGAcCGCCGGuGGCCcggcACCGa-GCAGCGa -3'
miRNA:   3'- -GCUaGUGGCC-CCGG----UGGCgcCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 10609 0.71 0.147318
Target:  5'- aCGGUCGCCucGGUCaugcaggacgcgACCGCGGCGGUGa -3'
miRNA:   3'- -GCUAGUGGccCCGG------------UGGCGCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 7308 0.73 0.116167
Target:  5'- --cUCGCCGGGGCCGuacCUGuCGGCuGCGc -3'
miRNA:   3'- gcuAGUGGCCCCGGU---GGC-GCCGuCGC- -5'
12880 5' -63.2 NC_003387.1 + 44978 0.75 0.081881
Target:  5'- gCGAUCGCCGcuGCCGCCGaGGCGGUGc -3'
miRNA:   3'- -GCUAGUGGCccCGGUGGCgCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 47270 0.72 0.132628
Target:  5'- uGGUCACCGcuuuGGCCGCCGuCGGC-GCc -3'
miRNA:   3'- gCUAGUGGCc---CCGGUGGC-GCCGuCGc -5'
12880 5' -63.2 NC_003387.1 + 12204 0.72 0.136169
Target:  5'- aGGUCGCUGcucggugccGGGCCACCGgCGGUcgccAGCGc -3'
miRNA:   3'- gCUAGUGGC---------CCCGGUGGC-GCCG----UCGC- -5'
12880 5' -63.2 NC_003387.1 + 26492 0.71 0.139796
Target:  5'- gCGAUCGCCGGGGCgaCGCUGUGaaugaAGCGc -3'
miRNA:   3'- -GCUAGUGGCCCCG--GUGGCGCcg---UCGC- -5'
12880 5' -63.2 NC_003387.1 + 40356 0.72 0.129172
Target:  5'- aGAUUGC--GGGCCGUCGCGGCGGCGu -3'
miRNA:   3'- gCUAGUGgcCCCGGUGGCGCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 6842 0.71 0.139796
Target:  5'- uCGAUCGCCcgcucGGCCGCgGCGcGCAGCc -3'
miRNA:   3'- -GCUAGUGGcc---CCGGUGgCGC-CGUCGc -5'
12880 5' -63.2 NC_003387.1 + 49253 0.67 0.269952
Target:  5'- gCGAuuUCACCuc-GCCGCCGCG-CAGCGa -3'
miRNA:   3'- -GCU--AGUGGcccCGGUGGCGCcGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 14627 0.67 0.269952
Target:  5'- aGGUCGCaGGugcccgucaGGCCGCCGCGcacagugacGCGGCGc -3'
miRNA:   3'- gCUAGUGgCC---------CCGGUGGCGC---------CGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 31017 0.67 0.269952
Target:  5'- aGGUCGgCGcGGGCCgcgcucGCCGaGGCGGCc -3'
miRNA:   3'- gCUAGUgGC-CCCGG------UGGCgCCGUCGc -5'
12880 5' -63.2 NC_003387.1 + 26573 0.66 0.311315
Target:  5'- uGAcUCcUCGGGGUCagGCCGCGcgaGCGGCGa -3'
miRNA:   3'- gCU-AGuGGCCCCGG--UGGCGC---CGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 28430 0.66 0.333738
Target:  5'- uGAUCACgugauCGGcGcGCaCGCCGaGGCGGCGg -3'
miRNA:   3'- gCUAGUG-----GCC-C-CG-GUGGCgCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 19058 0.68 0.256558
Target:  5'- uCGAccaUCGCCGccaGGGCCACgGUGaugcccuGCAGCGu -3'
miRNA:   3'- -GCU---AGUGGC---CCCGGUGgCGC-------CGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 30881 0.66 0.311315
Target:  5'- gCGGU-AgCGGGGCCAUCGCcGGgaaAGCGu -3'
miRNA:   3'- -GCUAgUgGCCCCGGUGGCG-CCg--UCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.