miRNA display CGI


Results 61 - 80 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12880 5' -63.2 NC_003387.1 + 47270 0.72 0.132628
Target:  5'- uGGUCACCGcuuuGGCCGCCGuCGGC-GCc -3'
miRNA:   3'- gCUAGUGGCc---CCGGUGGC-GCCGuCGc -5'
12880 5' -63.2 NC_003387.1 + 16756 0.69 0.195611
Target:  5'- ---cCGCCGaGGGCCuccucgACCGCGGCcuucGCGg -3'
miRNA:   3'- gcuaGUGGC-CCCGG------UGGCGCCGu---CGC- -5'
12880 5' -63.2 NC_003387.1 + 37779 0.69 0.200629
Target:  5'- cCGAUacCACCGGGGaugCGCCGCugcgccGGUAGCc -3'
miRNA:   3'- -GCUA--GUGGCCCCg--GUGGCG------CCGUCGc -5'
12880 5' -63.2 NC_003387.1 + 3406 0.67 0.283227
Target:  5'- gCGAUCAugcUCGGGGCCGugcCCuCGGCgugcucGGCGa -3'
miRNA:   3'- -GCUAGU---GGCCCCGGU---GGcGCCG------UCGC- -5'
12880 5' -63.2 NC_003387.1 + 30925 0.67 0.289368
Target:  5'- uCGcUCGCCGaGcuGCCGCCGCGGUcaacuugAGCGc -3'
miRNA:   3'- -GCuAGUGGC-Cc-CGGUGGCGCCG-------UCGC- -5'
12880 5' -63.2 NC_003387.1 + 33958 0.67 0.276526
Target:  5'- aGcUUGCCGGGGUCggguaugaGCUGCcGCAGCGg -3'
miRNA:   3'- gCuAGUGGCCCCGG--------UGGCGcCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 30503 0.67 0.276526
Target:  5'- -aAUUGCCGGGGCCgggGCCGCGaG-AGCc -3'
miRNA:   3'- gcUAGUGGCCCCGG---UGGCGC-CgUCGc -5'
12880 5' -63.2 NC_003387.1 + 49253 0.67 0.269952
Target:  5'- gCGAuuUCACCuc-GCCGCCGCG-CAGCGa -3'
miRNA:   3'- -GCU--AGUGGcccCGGUGGCGCcGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 14627 0.67 0.269952
Target:  5'- aGGUCGCaGGugcccgucaGGCCGCCGCGcacagugacGCGGCGc -3'
miRNA:   3'- gCUAGUGgCC---------CCGGUGGCGC---------CGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 16090 0.69 0.195611
Target:  5'- gGggCGCCGucGGG-CAUCGCGGCGGCc -3'
miRNA:   3'- gCuaGUGGC--CCCgGUGGCGCCGUCGc -5'
12880 5' -63.2 NC_003387.1 + 4615 0.7 0.17214
Target:  5'- uGAUCGgCGa-GCCACCGCGggcGCAGCGg -3'
miRNA:   3'- gCUAGUgGCccCGGUGGCGC---CGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 4516 0.71 0.163476
Target:  5'- gGGUCACCucGGCCGCCGCcgccGguGCGg -3'
miRNA:   3'- gCUAGUGGccCCGGUGGCGc---CguCGC- -5'
12880 5' -63.2 NC_003387.1 + 12204 0.72 0.136169
Target:  5'- aGGUCGCUGcucggugccGGGCCACCGgCGGUcgccAGCGc -3'
miRNA:   3'- gCUAGUGGC---------CCCGGUGGC-GCCG----UCGC- -5'
12880 5' -63.2 NC_003387.1 + 26492 0.71 0.139796
Target:  5'- gCGAUCGCCGGGGCgaCGCUGUGaaugaAGCGc -3'
miRNA:   3'- -GCUAGUGGCCCCG--GUGGCGCcg---UCGC- -5'
12880 5' -63.2 NC_003387.1 + 6842 0.71 0.139796
Target:  5'- uCGAUCGCCcgcucGGCCGCgGCGcGCAGCc -3'
miRNA:   3'- -GCUAGUGGcc---CCGGUGgCGC-CGUCGc -5'
12880 5' -63.2 NC_003387.1 + 6937 0.71 0.147318
Target:  5'- -cAUCAUCGcGGCCugCGCaGCGGCGg -3'
miRNA:   3'- gcUAGUGGCcCCGGugGCGcCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 3135 0.71 0.151216
Target:  5'- ---nCACUGccaGGCCACCGCccGGCAGCGg -3'
miRNA:   3'- gcuaGUGGCc--CCGGUGGCG--CCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 19988 0.71 0.151216
Target:  5'- cCGaAUCGCCGaGGCCACCGCGcCGuGCGc -3'
miRNA:   3'- -GC-UAGUGGCcCCGGUGGCGCcGU-CGC- -5'
12880 5' -63.2 NC_003387.1 + 3913 0.71 0.151216
Target:  5'- aCGAcCGgCGGGacgauggccGCCGCCGCGGCgaucAGCGg -3'
miRNA:   3'- -GCUaGUgGCCC---------CGGUGGCGCCG----UCGC- -5'
12880 5' -63.2 NC_003387.1 + 1948 0.71 0.155207
Target:  5'- uGAUCcgGCCGcGGGUCugGCCG-GGCAGCGc -3'
miRNA:   3'- gCUAG--UGGC-CCCGG--UGGCgCCGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.