miRNA display CGI


Results 81 - 100 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12880 5' -63.2 NC_003387.1 + 23375 0.68 0.238961
Target:  5'- aGGUCGCCGaGGaugaaGCgCGCGGCGGCu -3'
miRNA:   3'- gCUAGUGGCcCCgg---UG-GCGCCGUCGc -5'
12880 5' -63.2 NC_003387.1 + 4615 0.7 0.17214
Target:  5'- uGAUCGgCGa-GCCACCGCGggcGCAGCGg -3'
miRNA:   3'- gCUAGUgGCccCGGUGGCGC---CGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 4516 0.71 0.163476
Target:  5'- gGGUCACCucGGCCGCCGCcgccGguGCGg -3'
miRNA:   3'- gCUAGUGGccCCGGUGGCGc---CguCGC- -5'
12880 5' -63.2 NC_003387.1 + 1948 0.71 0.155207
Target:  5'- uGAUCcgGCCGcGGGUCugGCCG-GGCAGCGc -3'
miRNA:   3'- gCUAG--UGGC-CCCGG--UGGCgCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 3913 0.71 0.151216
Target:  5'- aCGAcCGgCGGGacgauggccGCCGCCGCGGCgaucAGCGg -3'
miRNA:   3'- -GCUaGUgGCCC---------CGGUGGCGCCG----UCGC- -5'
12880 5' -63.2 NC_003387.1 + 19988 0.71 0.151216
Target:  5'- cCGaAUCGCCGaGGCCACCGCGcCGuGCGc -3'
miRNA:   3'- -GC-UAGUGGCcCCGGUGGCGCcGU-CGC- -5'
12880 5' -63.2 NC_003387.1 + 3135 0.71 0.151216
Target:  5'- ---nCACUGccaGGCCACCGCccGGCAGCGg -3'
miRNA:   3'- gcuaGUGGCc--CCGGUGGCG--CCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 6937 0.71 0.147318
Target:  5'- -cAUCAUCGcGGCCugCGCaGCGGCGg -3'
miRNA:   3'- gcUAGUGGCcCCGGugGCGcCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 6842 0.71 0.139796
Target:  5'- uCGAUCGCCcgcucGGCCGCgGCGcGCAGCc -3'
miRNA:   3'- -GCUAGUGGcc---CCGGUGgCGC-CGUCGc -5'
12880 5' -63.2 NC_003387.1 + 16090 0.69 0.195611
Target:  5'- gGggCGCCGucGGG-CAUCGCGGCGGCc -3'
miRNA:   3'- gCuaGUGGC--CCCgGUGGCGCCGUCGc -5'
12880 5' -63.2 NC_003387.1 + 16756 0.69 0.195611
Target:  5'- ---cCGCCGaGGGCCuccucgACCGCGGCcuucGCGg -3'
miRNA:   3'- gcuaGUGGC-CCCGG------UGGCGCCGu---CGC- -5'
12880 5' -63.2 NC_003387.1 + 37779 0.69 0.200629
Target:  5'- cCGAUacCACCGGGGaugCGCCGCugcgccGGUAGCc -3'
miRNA:   3'- -GCUA--GUGGCCCCg--GUGGCG------CCGUCGc -5'
12880 5' -63.2 NC_003387.1 + 12822 0.68 0.233132
Target:  5'- -cGUCGCCGGGGCaGuuGUGGUgaGGCa -3'
miRNA:   3'- gcUAGUGGCCCCGgUggCGCCG--UCGc -5'
12880 5' -63.2 NC_003387.1 + 10741 0.69 0.221831
Target:  5'- uGAgCACCgcGGcGGCCuCCGCGcGCAGCu -3'
miRNA:   3'- gCUaGUGG--CC-CCGGuGGCGC-CGUCGc -5'
12880 5' -63.2 NC_003387.1 + 44260 0.69 0.216358
Target:  5'- -aAUCGCUgcggaauuGGGcGCCGCCGCaGGuCAGCGg -3'
miRNA:   3'- gcUAGUGG--------CCC-CGGUGGCG-CC-GUCGC- -5'
12880 5' -63.2 NC_003387.1 + 30251 0.69 0.216358
Target:  5'- gGGUCGUCGGGGUCGgCGCcggggucgGGCAGCc -3'
miRNA:   3'- gCUAGUGGCCCCGGUgGCG--------CCGUCGc -5'
12880 5' -63.2 NC_003387.1 + 6081 0.69 0.215278
Target:  5'- aCGAcCGCCGGGGCgucgucggcaggcuCGaacaccugcgacaugCGCGGCAGCGg -3'
miRNA:   3'- -GCUaGUGGCCCCG--------------GUg--------------GCGCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 18392 0.69 0.211001
Target:  5'- uCGAUCgGCUGcgacGGGUCgGCCGCGGgCAGCGc -3'
miRNA:   3'- -GCUAG-UGGC----CCCGG-UGGCGCC-GUCGC- -5'
12880 5' -63.2 NC_003387.1 + 8762 0.69 0.211001
Target:  5'- --uUCGCCaugcGGGCCuucGCCguGCGGCGGCGg -3'
miRNA:   3'- gcuAGUGGc---CCCGG---UGG--CGCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 30613 0.69 0.205758
Target:  5'- ---cCGCCaGGGCCGCCGgGGaUGGCGc -3'
miRNA:   3'- gcuaGUGGcCCCGGUGGCgCC-GUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.