Results 41 - 60 of 124 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12880 | 5' | -63.2 | NC_003387.1 | + | 14080 | 0.66 | 0.341471 |
Target: 5'- uGAUgCGCCGGaacugcagcGCCAgCGCGGCcuGCGg -3' miRNA: 3'- gCUA-GUGGCCc--------CGGUgGCGCCGu-CGC- -5' |
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12880 | 5' | -63.2 | NC_003387.1 | + | 42867 | 0.66 | 0.341471 |
Target: 5'- gGAaCACCGcGGuGCC-CgGCGGCgaGGCGa -3' miRNA: 3'- gCUaGUGGC-CC-CGGuGgCGCCG--UCGC- -5' |
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12880 | 5' | -63.2 | NC_003387.1 | + | 18216 | 0.66 | 0.349332 |
Target: 5'- gGAUCG-CGGcGCCGCaGCGGCGGgCGu -3' miRNA: 3'- gCUAGUgGCCcCGGUGgCGCCGUC-GC- -5' |
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12880 | 5' | -63.2 | NC_003387.1 | + | 1000 | 0.66 | 0.349332 |
Target: 5'- ----gACCGGGGUCggaugcGCUGCGGCcuuGCGu -3' miRNA: 3'- gcuagUGGCCCCGG------UGGCGCCGu--CGC- -5' |
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12880 | 5' | -63.2 | NC_003387.1 | + | 21683 | 0.66 | 0.349332 |
Target: 5'- uCGG-CGCCGGugccgugcuGGCCGCCGCccCGGCGc -3' miRNA: 3'- -GCUaGUGGCC---------CCGGUGGCGccGUCGC- -5' |
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12880 | 5' | -63.2 | NC_003387.1 | + | 26573 | 0.66 | 0.311315 |
Target: 5'- uGAcUCcUCGGGGUCagGCCGCGcgaGCGGCGa -3' miRNA: 3'- gCU-AGuGGCCCCGG--UGGCGC---CGUCGC- -5' |
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12880 | 5' | -63.2 | NC_003387.1 | + | 19240 | 0.66 | 0.311315 |
Target: 5'- gCGAUCG-CGGGcGCCgACCGCcuCGGCGa -3' miRNA: 3'- -GCUAGUgGCCC-CGG-UGGCGccGUCGC- -5' |
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12880 | 5' | -63.2 | NC_003387.1 | + | 14627 | 0.67 | 0.269952 |
Target: 5'- aGGUCGCaGGugcccgucaGGCCGCCGCGcacagugacGCGGCGc -3' miRNA: 3'- gCUAGUGgCC---------CCGGUGGCGC---------CGUCGC- -5' |
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12880 | 5' | -63.2 | NC_003387.1 | + | 49253 | 0.67 | 0.269952 |
Target: 5'- gCGAuuUCACCuc-GCCGCCGCG-CAGCGa -3' miRNA: 3'- -GCU--AGUGGcccCGGUGGCGCcGUCGC- -5' |
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12880 | 5' | -63.2 | NC_003387.1 | + | 30503 | 0.67 | 0.276526 |
Target: 5'- -aAUUGCCGGGGCCgggGCCGCGaG-AGCc -3' miRNA: 3'- gcUAGUGGCCCCGG---UGGCGC-CgUCGc -5' |
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12880 | 5' | -63.2 | NC_003387.1 | + | 33958 | 0.67 | 0.276526 |
Target: 5'- aGcUUGCCGGGGUCggguaugaGCUGCcGCAGCGg -3' miRNA: 3'- gCuAGUGGCCCCGG--------UGGCGcCGUCGC- -5' |
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12880 | 5' | -63.2 | NC_003387.1 | + | 3406 | 0.67 | 0.283227 |
Target: 5'- gCGAUCAugcUCGGGGCCGugcCCuCGGCgugcucGGCGa -3' miRNA: 3'- -GCUAGU---GGCCCCGGU---GGcGCCG------UCGC- -5' |
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12880 | 5' | -63.2 | NC_003387.1 | + | 30925 | 0.67 | 0.289368 |
Target: 5'- uCGcUCGCCGaGcuGCCGCCGCGGUcaacuugAGCGc -3' miRNA: 3'- -GCuAGUGGC-Cc-CGGUGGCGCCG-------UCGC- -5' |
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12880 | 5' | -63.2 | NC_003387.1 | + | 18827 | 0.67 | 0.290056 |
Target: 5'- aGAUCGCCGacGGGUCGCCGCccauguGCAuGUGc -3' miRNA: 3'- gCUAGUGGC--CCCGGUGGCGc-----CGU-CGC- -5' |
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12880 | 5' | -63.2 | NC_003387.1 | + | 52223 | 0.67 | 0.290056 |
Target: 5'- gCGGUCGCCacgcGGGcGCgCAUCGCGacgaGCAGCu -3' miRNA: 3'- -GCUAGUGG----CCC-CG-GUGGCGC----CGUCGc -5' |
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12880 | 5' | -63.2 | NC_003387.1 | + | 12477 | 0.67 | 0.294215 |
Target: 5'- aCGGUCacgacgagcugcauGCgGGGGCUGCCGUcgucccaGGuCAGCGg -3' miRNA: 3'- -GCUAG--------------UGgCCCCGGUGGCG-------CC-GUCGC- -5' |
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12880 | 5' | -63.2 | NC_003387.1 | + | 51466 | 0.67 | 0.297014 |
Target: 5'- --cUCGCCGGGGUCcgucgGCUuCGGUGGCGu -3' miRNA: 3'- gcuAGUGGCCCCGG-----UGGcGCCGUCGC- -5' |
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12880 | 5' | -63.2 | NC_003387.1 | + | 49532 | 0.67 | 0.3041 |
Target: 5'- uGcgCuGCUGGuuGGCCuCCGCGGCuGCGa -3' miRNA: 3'- gCuaG-UGGCC--CCGGuGGCGCCGuCGC- -5' |
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12880 | 5' | -63.2 | NC_003387.1 | + | 25414 | 0.67 | 0.30697 |
Target: 5'- gCGAUCACgGcgacgcggcucucaaGGGCCGCCaguGCGGCGuucuccucgcGCGa -3' miRNA: 3'- -GCUAGUGgC---------------CCCGGUGG---CGCCGU----------CGC- -5' |
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12880 | 5' | -63.2 | NC_003387.1 | + | 24959 | 0.66 | 0.311315 |
Target: 5'- gCGA-CA-CGaGGGCCuCCGCGGUGGUGu -3' miRNA: 3'- -GCUaGUgGC-CCCGGuGGCGCCGUCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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