miRNA display CGI


Results 61 - 80 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12880 5' -63.2 NC_003387.1 + 50993 0.68 0.250986
Target:  5'- uCGAUCagcACCGGGaugcGCCGCC-CGGCccgcucAGCGa -3'
miRNA:   3'- -GCUAG---UGGCCC----CGGUGGcGCCG------UCGC- -5'
12880 5' -63.2 NC_003387.1 + 7328 0.68 0.250986
Target:  5'- aCGAUCgGCUcGGGCgGCCGgGcGCAGCu -3'
miRNA:   3'- -GCUAG-UGGcCCCGgUGGCgC-CGUCGc -5'
12880 5' -63.2 NC_003387.1 + 49193 0.68 0.244912
Target:  5'- ---cCGCCuGGGGCgGCgGCGGgGGCa -3'
miRNA:   3'- gcuaGUGG-CCCCGgUGgCGCCgUCGc -5'
12880 5' -63.2 NC_003387.1 + 25183 0.68 0.244912
Target:  5'- gCGGUCAgCGaGGCuCAuacaggcaaccUCGCGGCGGCGg -3'
miRNA:   3'- -GCUAGUgGCcCCG-GU-----------GGCGCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 23375 0.68 0.238961
Target:  5'- aGGUCGCCGaGGaugaaGCgCGCGGCGGCu -3'
miRNA:   3'- gCUAGUGGCcCCgg---UG-GCGCCGUCGc -5'
12880 5' -63.2 NC_003387.1 + 12822 0.68 0.233132
Target:  5'- -cGUCGCCGGGGCaGuuGUGGUgaGGCa -3'
miRNA:   3'- gcUAGUGGCCCCGgUggCGCCG--UCGc -5'
12880 5' -63.2 NC_003387.1 + 31017 0.67 0.269952
Target:  5'- aGGUCGgCGcGGGCCgcgcucGCCGaGGCGGCc -3'
miRNA:   3'- gCUAGUgGC-CCCGG------UGGCgCCGUCGc -5'
12880 5' -63.2 NC_003387.1 + 14627 0.67 0.269952
Target:  5'- aGGUCGCaGGugcccgucaGGCCGCCGCGcacagugacGCGGCGc -3'
miRNA:   3'- gCUAGUGgCC---------CCGGUGGCGC---------CGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 12477 0.67 0.294215
Target:  5'- aCGGUCacgacgagcugcauGCgGGGGCUGCCGUcgucccaGGuCAGCGg -3'
miRNA:   3'- -GCUAG--------------UGgCCCCGGUGGCG-------CC-GUCGC- -5'
12880 5' -63.2 NC_003387.1 + 52223 0.67 0.290056
Target:  5'- gCGGUCGCCacgcGGGcGCgCAUCGCGacgaGCAGCu -3'
miRNA:   3'- -GCUAGUGG----CCC-CG-GUGGCGC----CGUCGc -5'
12880 5' -63.2 NC_003387.1 + 18827 0.67 0.290056
Target:  5'- aGAUCGCCGacGGGUCGCCGCccauguGCAuGUGc -3'
miRNA:   3'- gCUAGUGGC--CCCGGUGGCGc-----CGU-CGC- -5'
12880 5' -63.2 NC_003387.1 + 30925 0.67 0.289368
Target:  5'- uCGcUCGCCGaGcuGCCGCCGCGGUcaacuugAGCGc -3'
miRNA:   3'- -GCuAGUGGC-Cc-CGGUGGCGCCG-------UCGC- -5'
12880 5' -63.2 NC_003387.1 + 3406 0.67 0.283227
Target:  5'- gCGAUCAugcUCGGGGCCGugcCCuCGGCgugcucGGCGa -3'
miRNA:   3'- -GCUAGU---GGCCCCGGU---GGcGCCG------UCGC- -5'
12880 5' -63.2 NC_003387.1 + 33958 0.67 0.276526
Target:  5'- aGcUUGCCGGGGUCggguaugaGCUGCcGCAGCGg -3'
miRNA:   3'- gCuAGUGGCCCCGG--------UGGCGcCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 30503 0.67 0.276526
Target:  5'- -aAUUGCCGGGGCCgggGCCGCGaG-AGCc -3'
miRNA:   3'- gcUAGUGGCCCCGG---UGGCGC-CgUCGc -5'
12880 5' -63.2 NC_003387.1 + 49253 0.67 0.269952
Target:  5'- gCGAuuUCACCuc-GCCGCCGCG-CAGCGa -3'
miRNA:   3'- -GCU--AGUGGcccCGGUGGCGCcGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 37337 0.65 0.354911
Target:  5'- aCGAgccccCGCCGcGGGCugcgcuaucugcggCACCugucggGCGGCGGCGc -3'
miRNA:   3'- -GCUa----GUGGC-CCCG--------------GUGG------CGCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 628 0.78 0.046017
Target:  5'- gCGAgggCAgCGucGCCGCCGCGGCAGCGa -3'
miRNA:   3'- -GCUa--GUgGCccCGGUGGCGCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 13622 0.78 0.04986
Target:  5'- uGG-CACCGGgugaguucaacccGGCCACCGuCGGCGGCGg -3'
miRNA:   3'- gCUaGUGGCC-------------CCGGUGGC-GCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 40365 0.77 0.054312
Target:  5'- uGAUCgcgGCCGGGGCCAagggccucgaCGuCGGCGGCGa -3'
miRNA:   3'- gCUAG---UGGCCCCGGUg---------GC-GCCGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.