miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12880 5' -63.2 NC_003387.1 + 863 1.08 0.00021
Target:  5'- gCGAUCACCGGGGCCACCGCGGCAGCGa -3'
miRNA:   3'- -GCUAGUGGCCCCGGUGGCGCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 52264 0.91 0.004472
Target:  5'- cCGGUCGCCGucGGCCGCCGCGGCGGCGa -3'
miRNA:   3'- -GCUAGUGGCc-CCGGUGGCGCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 3110 0.81 0.027888
Target:  5'- uCGuaaAUCGGGGCCGCCaGCGGCAGCa -3'
miRNA:   3'- -GCuagUGGCCCCGGUGG-CGCCGUCGc -5'
12880 5' -63.2 NC_003387.1 + 740 0.81 0.027888
Target:  5'- aGGUgCGCCaGGaugcggucGGCCACCGCGGCAGCGa -3'
miRNA:   3'- gCUA-GUGG-CC--------CCGGUGGCGCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 23279 0.79 0.039728
Target:  5'- uCGAUCGCgaggauagcgaccgCGcGGGCCGCUGCGGCGGCc -3'
miRNA:   3'- -GCUAGUG--------------GC-CCCGGUGGCGCCGUCGc -5'
12880 5' -63.2 NC_003387.1 + 52070 0.79 0.041188
Target:  5'- uCGAaugguUCAUCGGGcgucGCUGCCGCGGCGGCGa -3'
miRNA:   3'- -GCU-----AGUGGCCC----CGGUGGCGCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 22060 0.78 0.044637
Target:  5'- gCGAUCACCGGcaccguuGGCgACgGCGGUAGCGc -3'
miRNA:   3'- -GCUAGUGGCC-------CCGgUGgCGCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 628 0.78 0.046017
Target:  5'- gCGAgggCAgCGucGCCGCCGCGGCAGCGa -3'
miRNA:   3'- -GCUa--GUgGCccCGGUGGCGCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 13622 0.78 0.04986
Target:  5'- uGG-CACCGGgugaguucaacccGGCCACCGuCGGCGGCGg -3'
miRNA:   3'- gCUaGUGGCC-------------CCGGUGGC-GCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 28864 0.78 0.049998
Target:  5'- gGGUCGCCGGuccacGGCCccgACUGCGGCGGCu -3'
miRNA:   3'- gCUAGUGGCC-----CCGG---UGGCGCCGUCGc -5'
12880 5' -63.2 NC_003387.1 + 27547 0.77 0.051397
Target:  5'- gCGG-CGCCGGGGCCACCGCGcCgAGCc -3'
miRNA:   3'- -GCUaGUGGCCCCGGUGGCGCcG-UCGc -5'
12880 5' -63.2 NC_003387.1 + 40365 0.77 0.054312
Target:  5'- uGAUCgcgGCCGGGGCCAagggccucgaCGuCGGCGGCGa -3'
miRNA:   3'- gCUAG---UGGCCCCGGUg---------GC-GCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 28407 0.77 0.055829
Target:  5'- aCGAUCGCCGagcagacccGGCUGCUGCGGCGGCu -3'
miRNA:   3'- -GCUAGUGGCc--------CCGGUGGCGCCGUCGc -5'
12880 5' -63.2 NC_003387.1 + 5554 0.77 0.055829
Target:  5'- gCGAcCACCaGGGCCACCGCGGU-GCc -3'
miRNA:   3'- -GCUaGUGGcCCCGGUGGCGCCGuCGc -5'
12880 5' -63.2 NC_003387.1 + 25181 0.77 0.058987
Target:  5'- gCGGUgGCCccGGcgccGCCGCCGCGGCAGCGc -3'
miRNA:   3'- -GCUAgUGG--CCc---CGGUGGCGCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 42032 0.76 0.06583
Target:  5'- uGA-UACCGGcGGCCACCGCcgaGGCGGCc -3'
miRNA:   3'- gCUaGUGGCC-CCGGUGGCG---CCGUCGc -5'
12880 5' -63.2 NC_003387.1 + 34414 0.76 0.069533
Target:  5'- -cGUUGCCGGGcGCCACCGCcGCGGCc -3'
miRNA:   3'- gcUAGUGGCCC-CGGUGGCGcCGUCGc -5'
12880 5' -63.2 NC_003387.1 + 41974 0.75 0.073436
Target:  5'- gGAgcugCGCgCGGaGGCCGCCGCGGUgcucaAGCGg -3'
miRNA:   3'- gCUa---GUG-GCC-CCGGUGGCGCCG-----UCGC- -5'
12880 5' -63.2 NC_003387.1 + 41310 0.75 0.077549
Target:  5'- aCGAcagCACCucGGGGCCgAUCGCGGcCAGCGu -3'
miRNA:   3'- -GCUa--GUGG--CCCCGG-UGGCGCC-GUCGC- -5'
12880 5' -63.2 NC_003387.1 + 44978 0.75 0.081881
Target:  5'- gCGAUCGCCGcuGCCGCCGaGGCGGUGc -3'
miRNA:   3'- -GCUAGUGGCccCGGUGGCgCCGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.