miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12881 3' -51.4 NC_003387.1 + 43633 0.66 0.911722
Target:  5'- cGCGAGCGggucGAgGGaCUGGCgcaccagcuaGUCGCc -3'
miRNA:   3'- -CGUUUGCa---CUgUCaGACCGag--------CAGCG- -5'
12881 3' -51.4 NC_003387.1 + 44628 0.66 0.911722
Target:  5'- cGCGAGCGUGugGccCUGGC-CG-CGg -3'
miRNA:   3'- -CGUUUGCACugUcaGACCGaGCaGCg -5'
12881 3' -51.4 NC_003387.1 + 5416 0.66 0.905021
Target:  5'- cGCAAGCGUuGCAGcCUgcGGCguuUCGCg -3'
miRNA:   3'- -CGUUUGCAcUGUCaGA--CCGagcAGCG- -5'
12881 3' -51.4 NC_003387.1 + 44 0.66 0.905021
Target:  5'- aGCAAACaccgGcCGGUCaucccGGCUaCGUCGCc -3'
miRNA:   3'- -CGUUUGca--CuGUCAGa----CCGA-GCAGCG- -5'
12881 3' -51.4 NC_003387.1 + 3972 0.66 0.898037
Target:  5'- uGCAAGgcuCGgcGACccgcgGGUCaUGGaCUCGUCGCg -3'
miRNA:   3'- -CGUUU---GCa-CUG-----UCAG-ACC-GAGCAGCG- -5'
12881 3' -51.4 NC_003387.1 + 14911 0.66 0.898037
Target:  5'- uGCAcGACGUGACGG-CUgcgcGGCUacCGgCGCa -3'
miRNA:   3'- -CGU-UUGCACUGUCaGA----CCGA--GCaGCG- -5'
12881 3' -51.4 NC_003387.1 + 15320 0.66 0.898037
Target:  5'- uGCu-GCGcGGCGacGaCUGGCUCGUCGa -3'
miRNA:   3'- -CGuuUGCaCUGU--CaGACCGAGCAGCg -5'
12881 3' -51.4 NC_003387.1 + 4950 0.66 0.883234
Target:  5'- uCGAACGUGACagaccagccGGUCaGGC-CGugcUCGCg -3'
miRNA:   3'- cGUUUGCACUG---------UCAGaCCGaGC---AGCG- -5'
12881 3' -51.4 NC_003387.1 + 12910 0.67 0.87463
Target:  5'- --cGGCGUGGgGGUgCcuaguggUGGCUCGUCGg -3'
miRNA:   3'- cguUUGCACUgUCA-G-------ACCGAGCAGCg -5'
12881 3' -51.4 NC_003387.1 + 29689 0.67 0.867354
Target:  5'- cGUcGACGUGGCcgaGGUCgagGcGCUCGgcggCGCc -3'
miRNA:   3'- -CGuUUGCACUG---UCAGa--C-CGAGCa---GCG- -5'
12881 3' -51.4 NC_003387.1 + 6620 0.67 0.866532
Target:  5'- aGCAGccggaacAUGUcGGCGGcCgucuugGGCUCGUCGUc -3'
miRNA:   3'- -CGUU-------UGCA-CUGUCaGa-----CCGAGCAGCG- -5'
12881 3' -51.4 NC_003387.1 + 33361 0.67 0.85391
Target:  5'- cGCAGGCGUGGCaaccagagcccgcccGGccagguucUCgccGcGCUCGUCGCu -3'
miRNA:   3'- -CGUUUGCACUG---------------UC--------AGa--C-CGAGCAGCG- -5'
12881 3' -51.4 NC_003387.1 + 46538 0.67 0.85045
Target:  5'- gGC-GGCGUGAcCAGUaaGGCcgaCGUCGUg -3'
miRNA:   3'- -CGuUUGCACU-GUCAgaCCGa--GCAGCG- -5'
12881 3' -51.4 NC_003387.1 + 20212 0.67 0.85045
Target:  5'- cCGGGCGUGcacGCAG-C-GGCagUCGUCGCa -3'
miRNA:   3'- cGUUUGCAC---UGUCaGaCCG--AGCAGCG- -5'
12881 3' -51.4 NC_003387.1 + 716 0.67 0.841635
Target:  5'- cGCAAGgcauCGUgucGACGGcCUGGC-CGUCGg -3'
miRNA:   3'- -CGUUU----GCA---CUGUCaGACCGaGCAGCg -5'
12881 3' -51.4 NC_003387.1 + 5691 0.68 0.813847
Target:  5'- aGCAagGugGcGGCGGUCaagGGCgugcccgcgUCGUCGCu -3'
miRNA:   3'- -CGU--UugCaCUGUCAGa--CCG---------AGCAGCG- -5'
12881 3' -51.4 NC_003387.1 + 35983 0.68 0.804171
Target:  5'- gGCGAGCGgauucuCAGaCUcGGCgUCGUCGCc -3'
miRNA:   3'- -CGUUUGCacu---GUCaGA-CCG-AGCAGCG- -5'
12881 3' -51.4 NC_003387.1 + 45523 0.68 0.804171
Target:  5'- aGCGAGC-UGACGGUgugCUGGC-CGU-GCg -3'
miRNA:   3'- -CGUUUGcACUGUCA---GACCGaGCAgCG- -5'
12881 3' -51.4 NC_003387.1 + 3323 0.68 0.79331
Target:  5'- uGCuguGGCGUGACAccgaggcccgcucGUUUGGCgcggUCGUCGa -3'
miRNA:   3'- -CGu--UUGCACUGU-------------CAGACCG----AGCAGCg -5'
12881 3' -51.4 NC_003387.1 + 21706 0.69 0.763696
Target:  5'- gGCGAGCGcGGCccgcgccgaccuGGUCgUGGaaaUCGUCGCc -3'
miRNA:   3'- -CGUUUGCaCUG------------UCAG-ACCg--AGCAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.