miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12881 5' -56.8 NC_003387.1 + 10020 0.66 0.66345
Target:  5'- -gGCGACGacgacgacGAGCCGAagCGCGcCgaggGCGCg -3'
miRNA:   3'- uaCGCUGC--------CUUGGCUa-GCGCaG----CGCG- -5'
12881 5' -56.8 NC_003387.1 + 40115 0.66 0.66345
Target:  5'- -gGCGGCGGc-CCG---GCGUCGgGCa -3'
miRNA:   3'- uaCGCUGCCuuGGCuagCGCAGCgCG- -5'
12881 5' -56.8 NC_003387.1 + 19383 0.66 0.652621
Target:  5'- -gGUGACGGuaaAGCaCGuugugcaGCGUCGUGCg -3'
miRNA:   3'- uaCGCUGCC---UUG-GCuag----CGCAGCGCG- -5'
12881 5' -56.8 NC_003387.1 + 4955 0.66 0.652621
Target:  5'- -cGUGACaGAccaGCCGGUcaggcCGUGcUCGCGCa -3'
miRNA:   3'- uaCGCUGcCU---UGGCUA-----GCGC-AGCGCG- -5'
12881 5' -56.8 NC_003387.1 + 26510 0.66 0.652621
Target:  5'- cUGUGAauGAagcGCCGcaCGuCGUCGCGCg -3'
miRNA:   3'- uACGCUgcCU---UGGCuaGC-GCAGCGCG- -5'
12881 5' -56.8 NC_003387.1 + 33073 0.66 0.650453
Target:  5'- aAUGCGGuuGAuaaugucGCUGAUCGagccgccCGUCGCGCc -3'
miRNA:   3'- -UACGCUgcCU-------UGGCUAGC-------GCAGCGCG- -5'
12881 5' -56.8 NC_003387.1 + 37238 0.66 0.641774
Target:  5'- -gGCGACGauuucgacGAGCUGAaCGUGUCGgccCGCg -3'
miRNA:   3'- uaCGCUGC--------CUUGGCUaGCGCAGC---GCG- -5'
12881 5' -56.8 NC_003387.1 + 28230 0.66 0.641774
Target:  5'- -cGCGACGGcucGACCGAgcagauCGUCGaGCg -3'
miRNA:   3'- uaCGCUGCC---UUGGCUagc---GCAGCgCG- -5'
12881 5' -56.8 NC_003387.1 + 9610 0.66 0.641774
Target:  5'- -cGCGGC---GCCGcgC-CGUCGCGCu -3'
miRNA:   3'- uaCGCUGccuUGGCuaGcGCAGCGCG- -5'
12881 5' -56.8 NC_003387.1 + 8782 0.66 0.641774
Target:  5'- cGUGCGGCGGcgggcGACCuGAUuccCGCucagcUCGCGCc -3'
miRNA:   3'- -UACGCUGCC-----UUGG-CUA---GCGc----AGCGCG- -5'
12881 5' -56.8 NC_003387.1 + 7617 0.66 0.641774
Target:  5'- -gGCGACcaaguGACCGAUgCGCGgggGCGCa -3'
miRNA:   3'- uaCGCUGcc---UUGGCUA-GCGCag-CGCG- -5'
12881 5' -56.8 NC_003387.1 + 37824 0.66 0.630917
Target:  5'- -cGCGAUcGGGCCGAgCGagGUCGgGCa -3'
miRNA:   3'- uaCGCUGcCUUGGCUaGCg-CAGCgCG- -5'
12881 5' -56.8 NC_003387.1 + 8816 0.66 0.630917
Target:  5'- -gGCGACGaAAUCGGU-GCGcUGCGCg -3'
miRNA:   3'- uaCGCUGCcUUGGCUAgCGCaGCGCG- -5'
12881 5' -56.8 NC_003387.1 + 4483 0.66 0.630917
Target:  5'- -gGCcGCGGccGACCGggCGCGacacgaUCGUGCg -3'
miRNA:   3'- uaCGcUGCC--UUGGCuaGCGC------AGCGCG- -5'
12881 5' -56.8 NC_003387.1 + 25212 0.66 0.630917
Target:  5'- -cGCGGCGGcGGCCgGAUCu--UCGCGCc -3'
miRNA:   3'- uaCGCUGCC-UUGG-CUAGcgcAGCGCG- -5'
12881 5' -56.8 NC_003387.1 + 51885 0.66 0.630917
Target:  5'- uUGCGAacaugUGGccgcguacaGGCCGucGUCGCGcuUCGCGCa -3'
miRNA:   3'- uACGCU-----GCC---------UUGGC--UAGCGC--AGCGCG- -5'
12881 5' -56.8 NC_003387.1 + 52246 0.66 0.630917
Target:  5'- -cGCGACGaGcagcucgcGCCGGUCGCcGUCGgcCGCc -3'
miRNA:   3'- uaCGCUGC-Cu-------UGGCUAGCG-CAGC--GCG- -5'
12881 5' -56.8 NC_003387.1 + 34118 0.66 0.630917
Target:  5'- --uCGGCGGcgUCGAcgUCGCGgUGCGCg -3'
miRNA:   3'- uacGCUGCCuuGGCU--AGCGCaGCGCG- -5'
12881 5' -56.8 NC_003387.1 + 19634 0.66 0.624404
Target:  5'- -cGCGACGGGcgGCuCGAUCaGCGacauuaucaaccgcaUUGUGCa -3'
miRNA:   3'- uaCGCUGCCU--UG-GCUAG-CGC---------------AGCGCG- -5'
12881 5' -56.8 NC_003387.1 + 19133 0.66 0.620062
Target:  5'- --uCGGCGGGAUCuucGUCGCGcaCGCGCu -3'
miRNA:   3'- uacGCUGCCUUGGc--UAGCGCa-GCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.