miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12882 3' -58 NC_003387.1 + 2258 0.66 0.560368
Target:  5'- aAGG-GGCu---GCGUGGgcGCCCCGAGg -3'
miRNA:   3'- gUCCuCCGucugUGUACC--UGGGGCUC- -5'
12882 3' -58 NC_003387.1 + 46290 0.66 0.549712
Target:  5'- uGGGAGGCcgagcaggcGGCGCAgcGGGCCgCUGGGa -3'
miRNA:   3'- gUCCUCCGu--------CUGUGUa-CCUGG-GGCUC- -5'
12882 3' -58 NC_003387.1 + 34771 0.66 0.539119
Target:  5'- uGGGAGGaCAGcCGCG-GGGCCUCGc- -3'
miRNA:   3'- gUCCUCC-GUCuGUGUaCCUGGGGCuc -5'
12882 3' -58 NC_003387.1 + 1531 0.66 0.525455
Target:  5'- --cGGGGCGGugGCAcGaccuguucgaccucGGCCCCGAGg -3'
miRNA:   3'- gucCUCCGUCugUGUaC--------------CUGGGGCUC- -5'
12882 3' -58 NC_003387.1 + 47038 0.67 0.477257
Target:  5'- -cGGccGGGCAuGAgGCGUGGcgcucguuuuACCCCGAGc -3'
miRNA:   3'- guCC--UCCGU-CUgUGUACC----------UGGGGCUC- -5'
12882 3' -58 NC_003387.1 + 49418 0.67 0.467281
Target:  5'- -cGGAGGUGGGCGCGUGaacguCgCCGAGc -3'
miRNA:   3'- guCCUCCGUCUGUGUACcu---GgGGCUC- -5'
12882 3' -58 NC_003387.1 + 16982 0.68 0.428504
Target:  5'- -uGGcgcGGGCGGGCugcguCAUcGACCCCGAGc -3'
miRNA:   3'- guCC---UCCGUCUGu----GUAcCUGGGGCUC- -5'
12882 3' -58 NC_003387.1 + 47934 0.69 0.382817
Target:  5'- gCAGGcauGGGCAcGACGCcguGUGGGCCgCGAa -3'
miRNA:   3'- -GUCC---UCCGU-CUGUG---UACCUGGgGCUc -5'
12882 3' -58 NC_003387.1 + 37147 0.7 0.324529
Target:  5'- uGGGcacucgcuGGGCGGGCGCAUGGuCaCCGAGc -3'
miRNA:   3'- gUCC--------UCCGUCUGUGUACCuGgGGCUC- -5'
12882 3' -58 NC_003387.1 + 39600 0.72 0.240526
Target:  5'- cCAGcGAGGCcGACGaGUGGAUCgCCGAGg -3'
miRNA:   3'- -GUC-CUCCGuCUGUgUACCUGG-GGCUC- -5'
12882 3' -58 NC_003387.1 + 85 1.07 0.000659
Target:  5'- cCAGGAGGCAGACACAUGGACCCCGAGc -3'
miRNA:   3'- -GUCCUCCGUCUGUGUACCUGGGGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.