miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12882 5' -62.8 NC_003387.1 + 9125 0.67 0.317146
Target:  5'- gGCCCGCCUucugcgcgaucugcgCGAccugGCGGaucaucUUGUCCUCGu -3'
miRNA:   3'- gCGGGCGGA---------------GCUa---CGCC------AGCGGGAGC- -5'
12882 5' -62.8 NC_003387.1 + 45208 0.67 0.314207
Target:  5'- gCGCCgCGCCUCGAaaUGCG-UCa-CCUCGu -3'
miRNA:   3'- -GCGG-GCGGAGCU--ACGCcAGcgGGAGC- -5'
12882 5' -62.8 NC_003387.1 + 23478 0.67 0.30695
Target:  5'- aCGaCCCGCCguUCGAgcgGCGGUucuggUGCCCg-- -3'
miRNA:   3'- -GC-GGGCGG--AGCUa--CGCCA-----GCGGGagc -5'
12882 5' -62.8 NC_003387.1 + 29425 0.67 0.30695
Target:  5'- aGgCCGCCgcagCGGcccgcGCGGUCGCuauCCUCGc -3'
miRNA:   3'- gCgGGCGGa---GCUa----CGCCAGCG---GGAGC- -5'
12882 5' -62.8 NC_003387.1 + 49580 0.67 0.30695
Target:  5'- gCGCCCGCUgcCGG-GCGGUgGCCUg-- -3'
miRNA:   3'- -GCGGGCGGa-GCUaCGCCAgCGGGagc -5'
12882 5' -62.8 NC_003387.1 + 41035 0.67 0.30695
Target:  5'- aGCUCgGCCUCGAUcGCGucgCGCaCCUUGg -3'
miRNA:   3'- gCGGG-CGGAGCUA-CGCca-GCG-GGAGC- -5'
12882 5' -62.8 NC_003387.1 + 26131 0.67 0.299822
Target:  5'- aGCCuCGCgaaugugguaCUCGAugUGCGG-CGCCgUCGg -3'
miRNA:   3'- gCGG-GCG----------GAGCU--ACGCCaGCGGgAGC- -5'
12882 5' -62.8 NC_003387.1 + 40818 0.67 0.299822
Target:  5'- aCGCCCGCCUUGucgaGGgCGCgCUUGg -3'
miRNA:   3'- -GCGGGCGGAGCuacgCCaGCGgGAGC- -5'
12882 5' -62.8 NC_003387.1 + 20751 0.67 0.299822
Target:  5'- -aCCUGUgCUCGAUGCGccugcaaggcgcGUCgGCCCUCGg -3'
miRNA:   3'- gcGGGCG-GAGCUACGC------------CAG-CGGGAGC- -5'
12882 5' -62.8 NC_003387.1 + 24288 0.67 0.299822
Target:  5'- gGCCaauuCGUC-CGGUGCGGUgCGCCgUCa -3'
miRNA:   3'- gCGG----GCGGaGCUACGCCA-GCGGgAGc -5'
12882 5' -62.8 NC_003387.1 + 21032 0.67 0.299822
Target:  5'- uGCCCGCCccugcccgGAUGaCGc-CGCCCUCGg -3'
miRNA:   3'- gCGGGCGGag------CUAC-GCcaGCGGGAGC- -5'
12882 5' -62.8 NC_003387.1 + 5896 0.67 0.285952
Target:  5'- cCGcCCCGCCUUGcgcGgGGUUGCgCUUCGg -3'
miRNA:   3'- -GC-GGGCGGAGCua-CgCCAGCG-GGAGC- -5'
12882 5' -62.8 NC_003387.1 + 19255 0.67 0.285952
Target:  5'- aCGUgCCGUUagCGAccgUGCGGgccgCGCCCUCGa -3'
miRNA:   3'- -GCG-GGCGGa-GCU---ACGCCa---GCGGGAGC- -5'
12882 5' -62.8 NC_003387.1 + 10684 0.68 0.279208
Target:  5'- aCGgCCGCCUCGGcgGUGGcCGCCgguaUCa -3'
miRNA:   3'- -GCgGGCGGAGCUa-CGCCaGCGGg---AGc -5'
12882 5' -62.8 NC_003387.1 + 47210 0.68 0.279208
Target:  5'- cCGCCgGUgUCGGcauUGUGGUgGgCCUCGg -3'
miRNA:   3'- -GCGGgCGgAGCU---ACGCCAgCgGGAGC- -5'
12882 5' -62.8 NC_003387.1 + 28891 0.68 0.272592
Target:  5'- gCGCCgaGUCcCGgcGCGG-CGCCCUCa -3'
miRNA:   3'- -GCGGg-CGGaGCuaCGCCaGCGGGAGc -5'
12882 5' -62.8 NC_003387.1 + 31608 0.68 0.272592
Target:  5'- gGCCCGCCUCGGUauucGUGaccgcacCGCCCUgGc -3'
miRNA:   3'- gCGGGCGGAGCUA----CGCca-----GCGGGAgC- -5'
12882 5' -62.8 NC_003387.1 + 43709 0.68 0.266103
Target:  5'- gCGCCCGCCaggugcUCGAcggcggcaUGCGGgaGCCCgCGa -3'
miRNA:   3'- -GCGGGCGG------AGCU--------ACGCCagCGGGaGC- -5'
12882 5' -62.8 NC_003387.1 + 8373 0.68 0.266103
Target:  5'- gCGCCgCGCCggUGAUcCacacGUCGCCCUCGg -3'
miRNA:   3'- -GCGG-GCGGa-GCUAcGc---CAGCGGGAGC- -5'
12882 5' -62.8 NC_003387.1 + 43792 0.68 0.259739
Target:  5'- cCGCaugCCGCCgUCGAgcaccugGCGGgCGCCgUCGg -3'
miRNA:   3'- -GCG---GGCGG-AGCUa------CGCCaGCGGgAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.