miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12884 5' -53.7 NC_003387.1 + 49840 0.66 0.81467
Target:  5'- gGCGagCGAGuuccugCCGauguaCGACGAGGAg -3'
miRNA:   3'- aUGCa-GCUCuaaa--GGCg----GCUGCUCCU- -5'
12884 5' -53.7 NC_003387.1 + 41945 0.66 0.805144
Target:  5'- gACGaccCGAcGAUgcaggCCGCCaGCGAGGAg -3'
miRNA:   3'- aUGCa--GCU-CUAaa---GGCGGcUGCUCCU- -5'
12884 5' -53.7 NC_003387.1 + 29859 0.66 0.795433
Target:  5'- -cUGUCGA----UUCGUCGGCGAGGGc -3'
miRNA:   3'- auGCAGCUcuaaAGGCGGCUGCUCCU- -5'
12884 5' -53.7 NC_003387.1 + 51384 0.66 0.7755
Target:  5'- -uUGUgCGAGGcgccgCCGCCGACGAGc- -3'
miRNA:   3'- auGCA-GCUCUaaa--GGCGGCUGCUCcu -5'
12884 5' -53.7 NC_003387.1 + 8708 0.67 0.765302
Target:  5'- gACGUCGAcGAg--CCGCuCGACGAc-- -3'
miRNA:   3'- aUGCAGCU-CUaaaGGCG-GCUGCUccu -5'
12884 5' -53.7 NC_003387.1 + 18984 0.67 0.744499
Target:  5'- aGgGUCGAGcgcgCCGCCGACGGc-- -3'
miRNA:   3'- aUgCAGCUCuaaaGGCGGCUGCUccu -5'
12884 5' -53.7 NC_003387.1 + 19758 0.67 0.744499
Target:  5'- gGCGUCGAacGAg--CCGUCGACGcccAGGu -3'
miRNA:   3'- aUGCAGCU--CUaaaGGCGGCUGC---UCCu -5'
12884 5' -53.7 NC_003387.1 + 50454 0.67 0.733918
Target:  5'- -gUGUCGAGGccgCCGUCGGCGucGAg -3'
miRNA:   3'- auGCAGCUCUaaaGGCGGCUGCucCU- -5'
12884 5' -53.7 NC_003387.1 + 30219 0.67 0.733918
Target:  5'- gACGUCGAGcg---CGCCGcCGAGGc -3'
miRNA:   3'- aUGCAGCUCuaaagGCGGCuGCUCCu -5'
12884 5' -53.7 NC_003387.1 + 29750 0.68 0.701598
Target:  5'- cACGUCGAcGUcgaCGUCGGCGAGGc -3'
miRNA:   3'- aUGCAGCUcUAaagGCGGCUGCUCCu -5'
12884 5' -53.7 NC_003387.1 + 13453 0.68 0.668658
Target:  5'- cUGCuGUCGGGcaagggCCGCgaCGGCGAGGAg -3'
miRNA:   3'- -AUG-CAGCUCuaaa--GGCG--GCUGCUCCU- -5'
12884 5' -53.7 NC_003387.1 + 37930 0.7 0.580041
Target:  5'- -uCGUCGAGGcgagCCGCCgGGCGcAGGGg -3'
miRNA:   3'- auGCAGCUCUaaa-GGCGG-CUGC-UCCU- -5'
12884 5' -53.7 NC_003387.1 + 40183 0.7 0.558141
Target:  5'- gACGcCGGGccg-CCGCCuGCGAGGAa -3'
miRNA:   3'- aUGCaGCUCuaaaGGCGGcUGCUCCU- -5'
12884 5' -53.7 NC_003387.1 + 36137 0.7 0.558141
Target:  5'- -uCGUCGAGugagCC-CCGACGAGGc -3'
miRNA:   3'- auGCAGCUCuaaaGGcGGCUGCUCCu -5'
12884 5' -53.7 NC_003387.1 + 17975 0.71 0.514063
Target:  5'- gGCGUCGAGAaugUUCGUCGACGGcccgcgcGGGc -3'
miRNA:   3'- aUGCAGCUCUaa-AGGCGGCUGCU-------CCU- -5'
12884 5' -53.7 NC_003387.1 + 28572 0.72 0.433652
Target:  5'- aGCGUCGucguGGUUgCCGCCGACGAc-- -3'
miRNA:   3'- aUGCAGCu---CUAAaGGCGGCUGCUccu -5'
12884 5' -53.7 NC_003387.1 + 37172 0.74 0.360174
Target:  5'- cACGUCGAGGg--CgCGCaCGGCGAGGu -3'
miRNA:   3'- aUGCAGCUCUaaaG-GCG-GCUGCUCCu -5'
12884 5' -53.7 NC_003387.1 + 41364 0.77 0.234553
Target:  5'- -uCGUCGAGGUUUCgcucguCGCCGuCGAGGGg -3'
miRNA:   3'- auGCAGCUCUAAAG------GCGGCuGCUCCU- -5'
12884 5' -53.7 NC_003387.1 + 1334 1.07 0.002007
Target:  5'- gUACGUCGAGAUUUCCGCCGACGAGGAc -3'
miRNA:   3'- -AUGCAGCUCUAAAGGCGGCUGCUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.