miRNA display CGI


Results 1 - 17 of 17 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12885 3' -59.1 NC_003387.1 + 12373 0.66 0.526664
Target:  5'- cUCGUgcCGGUGcc--CGgCCCGCUGAUCc -3'
miRNA:   3'- -AGCA--GCCACuccaGCgGGGCGACUAG- -5'
12885 3' -59.1 NC_003387.1 + 13008 0.66 0.526664
Target:  5'- gUCGUCGGgcaAGGUCGacagcgCCCGCacGUCg -3'
miRNA:   3'- -AGCAGCCac-UCCAGCg-----GGGCGacUAG- -5'
12885 3' -59.1 NC_003387.1 + 42562 0.66 0.516384
Target:  5'- gCGUUGGgGAucucccacggcgGGaUCGCCCgGUUGGUCg -3'
miRNA:   3'- aGCAGCCaCU------------CC-AGCGGGgCGACUAG- -5'
12885 3' -59.1 NC_003387.1 + 1244 0.66 0.516384
Target:  5'- aUCGcguucUCGGUGAGGaucugCGCCUCGUcGAa- -3'
miRNA:   3'- -AGC-----AGCCACUCCa----GCGGGGCGaCUag -5'
12885 3' -59.1 NC_003387.1 + 11432 0.66 0.506186
Target:  5'- gUCGUCGGUGcucgUGCCCgCGCUGcagcUCg -3'
miRNA:   3'- -AGCAGCCACuccaGCGGG-GCGACu---AG- -5'
12885 3' -59.1 NC_003387.1 + 24962 0.66 0.506186
Target:  5'- cCGUCGGUGgacAGGgcgcaGCCaCCGCccgaGGUCg -3'
miRNA:   3'- aGCAGCCAC---UCCag---CGG-GGCGa---CUAG- -5'
12885 3' -59.1 NC_003387.1 + 42002 0.66 0.486057
Target:  5'- cUCaagCGGUGGGGcCGCCUgGCcgugaUGGUCg -3'
miRNA:   3'- -AGca-GCCACUCCaGCGGGgCG-----ACUAG- -5'
12885 3' -59.1 NC_003387.1 + 22961 0.66 0.486057
Target:  5'- gCGUCGGUcuugccGGGGUCaGCCgagugcagGCUGAUCa -3'
miRNA:   3'- aGCAGCCA------CUCCAG-CGGgg------CGACUAG- -5'
12885 3' -59.1 NC_003387.1 + 45571 0.66 0.486057
Target:  5'- cUCGUCGGcacggccGAGGagccgggccUCGCgUgGCUGAUCg -3'
miRNA:   3'- -AGCAGCCa------CUCC---------AGCGgGgCGACUAG- -5'
12885 3' -59.1 NC_003387.1 + 50882 0.67 0.466315
Target:  5'- gUCGgccgCGGUGAGGUCGaUCgUGCagcgcaUGAUCc -3'
miRNA:   3'- -AGCa---GCCACUCCAGC-GGgGCG------ACUAG- -5'
12885 3' -59.1 NC_003387.1 + 40922 0.67 0.466315
Target:  5'- gUGUCGGUGAGcG-CGUCgCGCacGAUCg -3'
miRNA:   3'- aGCAGCCACUC-CaGCGGgGCGa-CUAG- -5'
12885 3' -59.1 NC_003387.1 + 10584 0.68 0.418878
Target:  5'- aUCGcCGaGccGAG--CGCCCCGCUGAUCu -3'
miRNA:   3'- -AGCaGC-Ca-CUCcaGCGGGGCGACUAG- -5'
12885 3' -59.1 NC_003387.1 + 6007 0.68 0.383109
Target:  5'- aCG-CGccGAGGUCGCCUCGCUcAUCc -3'
miRNA:   3'- aGCaGCcaCUCCAGCGGGGCGAcUAG- -5'
12885 3' -59.1 NC_003387.1 + 17550 0.7 0.295709
Target:  5'- aUCGgcccgaagGGUGAcaaGGgcgacaaCGCCCCGCUGGUCg -3'
miRNA:   3'- -AGCag------CCACU---CCa------GCGGGGCGACUAG- -5'
12885 3' -59.1 NC_003387.1 + 51854 0.7 0.281589
Target:  5'- gCGUCGcUGccgcGGUgGCCCCGgUGAUCg -3'
miRNA:   3'- aGCAGCcACu---CCAgCGGGGCgACUAG- -5'
12885 3' -59.1 NC_003387.1 + 37373 0.73 0.20261
Target:  5'- cUGUCGGgcgGcGG-CGCCCCGCUG-UCg -3'
miRNA:   3'- aGCAGCCa--CuCCaGCGGGGCGACuAG- -5'
12885 3' -59.1 NC_003387.1 + 2861 1.09 0.000456
Target:  5'- aUCGUCGGUGAGGUCGCCCCGCUGAUCc -3'
miRNA:   3'- -AGCAGCCACUCCAGCGGGGCGACUAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.