miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12885 5' -49.7 NC_003387.1 + 36768 0.66 0.963434
Target:  5'- uCGAgauUCAGCUugcccgCGGUGAACg-CGGCCa -3'
miRNA:   3'- cGCU---AGUUGA------GCCACUUGaaGCUGGc -5'
12885 5' -49.7 NC_003387.1 + 49244 0.66 0.963434
Target:  5'- aGCGGcugcUCGACgccggGGUGAcgcGCaUCGACCGc -3'
miRNA:   3'- -CGCU----AGUUGag---CCACU---UGaAGCUGGC- -5'
12885 5' -49.7 NC_003387.1 + 30108 0.66 0.963434
Target:  5'- gGCGGguaccgCcGCaaGGgccUGAGCUUCGACCGu -3'
miRNA:   3'- -CGCUa-----GuUGagCC---ACUUGAAGCUGGC- -5'
12885 5' -49.7 NC_003387.1 + 51192 0.66 0.963434
Target:  5'- gGCGAUC--CUCGGcaccgaggugcUGAGCcugcacgUCGGCCGc -3'
miRNA:   3'- -CGCUAGuuGAGCC-----------ACUUGa------AGCUGGC- -5'
12885 5' -49.7 NC_003387.1 + 34523 0.66 0.963434
Target:  5'- cGCGAUC--CUCGGgcuGCccgUCGACCc -3'
miRNA:   3'- -CGCUAGuuGAGCCacuUGa--AGCUGGc -5'
12885 5' -49.7 NC_003387.1 + 47334 0.66 0.963434
Target:  5'- uCGGUCAGCUCGGgcaGAuCguucaagUCGcCCGg -3'
miRNA:   3'- cGCUAGUUGAGCCa--CUuGa------AGCuGGC- -5'
12885 5' -49.7 NC_003387.1 + 10944 0.66 0.959581
Target:  5'- cGCGGUCGACUCuGaGAcUUUCcGCCGg -3'
miRNA:   3'- -CGCUAGUUGAGcCaCUuGAAGcUGGC- -5'
12885 5' -49.7 NC_003387.1 + 47674 0.66 0.959581
Target:  5'- gGCGAgaaccgCAGCgugcgacccgaUCGGUcGAGCUUC-ACCGa -3'
miRNA:   3'- -CGCUa-----GUUG-----------AGCCA-CUUGAAGcUGGC- -5'
12885 5' -49.7 NC_003387.1 + 8857 0.66 0.958373
Target:  5'- uCGAUCGGCUUGGUcuggucgucGAuCUugacgguuacgcccUCGACCGa -3'
miRNA:   3'- cGCUAGUUGAGCCA---------CUuGA--------------AGCUGGC- -5'
12885 5' -49.7 NC_003387.1 + 25745 0.66 0.95106
Target:  5'- gGCGA-CAuuCUCGGcaUGAugUUCGgcACCGg -3'
miRNA:   3'- -CGCUaGUu-GAGCC--ACUugAAGC--UGGC- -5'
12885 5' -49.7 NC_003387.1 + 46848 0.66 0.95106
Target:  5'- uCGAUCAGCUCGccGAACcgcgagucgcUCGACCc -3'
miRNA:   3'- cGCUAGUUGAGCcaCUUGa---------AGCUGGc -5'
12885 5' -49.7 NC_003387.1 + 22253 0.67 0.946379
Target:  5'- aCGggCAGCUcuacgucggCGGUGGACUggcaGACCa -3'
miRNA:   3'- cGCuaGUUGA---------GCCACUUGAag--CUGGc -5'
12885 5' -49.7 NC_003387.1 + 47215 0.67 0.946379
Target:  5'- gGUG-UCGGCauugUGGUGGGCcUCGGCCa -3'
miRNA:   3'- -CGCuAGUUGa---GCCACUUGaAGCUGGc -5'
12885 5' -49.7 NC_003387.1 + 10609 0.67 0.946379
Target:  5'- aCGGUCGcCUCGGUcaugcaGGACg-CGACCGc -3'
miRNA:   3'- cGCUAGUuGAGCCA------CUUGaaGCUGGC- -5'
12885 5' -49.7 NC_003387.1 + 47011 0.67 0.941414
Target:  5'- cGCgGAUCGACaccUCGGUGcccggcucaAGCgugCGGCCGu -3'
miRNA:   3'- -CG-CUAGUUG---AGCCAC---------UUGaa-GCUGGC- -5'
12885 5' -49.7 NC_003387.1 + 3443 0.67 0.941414
Target:  5'- cCGAggcCAGCUUGGUGAugccguCgaCGACCGc -3'
miRNA:   3'- cGCUa--GUUGAGCCACUu-----GaaGCUGGC- -5'
12885 5' -49.7 NC_003387.1 + 28035 0.67 0.936159
Target:  5'- cCGAUC--CUCGGcGAGCUgaCGACCa -3'
miRNA:   3'- cGCUAGuuGAGCCaCUUGAa-GCUGGc -5'
12885 5' -49.7 NC_003387.1 + 1700 0.67 0.936159
Target:  5'- gGCGGUCGACuggaUCGcUGAGCg--GGCCGg -3'
miRNA:   3'- -CGCUAGUUG----AGCcACUUGaagCUGGC- -5'
12885 5' -49.7 NC_003387.1 + 21152 0.67 0.935618
Target:  5'- gGCGGUCAagcagcgGCUCGGcgagGAGCUUU--CCGa -3'
miRNA:   3'- -CGCUAGU-------UGAGCCa---CUUGAAGcuGGC- -5'
12885 5' -49.7 NC_003387.1 + 6973 0.67 0.930615
Target:  5'- gGCGAUagcgcacuaggCAGC-CGGUGccacGACggCGACCGg -3'
miRNA:   3'- -CGCUA-----------GUUGaGCCAC----UUGaaGCUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.