miRNA display CGI


Results 1 - 20 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12886 3' -58.6 NC_003387.1 + 4320 0.66 0.519078
Target:  5'- -uGCGGCGUAgugaGGC-CGUCGCGGcgGGCc -3'
miRNA:   3'- guCGUCGCGU----UCGaGCGGCGCU--UCGc -5'
12886 3' -58.6 NC_003387.1 + 16970 0.66 0.519078
Target:  5'- uGGCguuucaccuGGCGCGGGCggGCUGCGucaucgaccccGAGCGg -3'
miRNA:   3'- gUCG---------UCGCGUUCGagCGGCGC-----------UUCGC- -5'
12886 3' -58.6 NC_003387.1 + 48334 0.66 0.519078
Target:  5'- -cGCgAGCGCGAGUaucaggagcaccUgGCCGCcGAGCGc -3'
miRNA:   3'- guCG-UCGCGUUCG------------AgCGGCGcUUCGC- -5'
12886 3' -58.6 NC_003387.1 + 43730 0.66 0.519078
Target:  5'- gCGGCAuGCGgGAGCcCGCgaGCGuguuGGCGg -3'
miRNA:   3'- -GUCGU-CGCgUUCGaGCGg-CGCu---UCGC- -5'
12886 3' -58.6 NC_003387.1 + 44385 0.66 0.519078
Target:  5'- cCGGUggucgacgaGGCG-AAGCUCGCCGCGGcugacGCu -3'
miRNA:   3'- -GUCG---------UCGCgUUCGAGCGGCGCUu----CGc -5'
12886 3' -58.6 NC_003387.1 + 13072 0.66 0.519078
Target:  5'- aAGCAGUaCGcGCUCGaCaagGCGAAGCGu -3'
miRNA:   3'- gUCGUCGcGUuCGAGC-Gg--CGCUUCGC- -5'
12886 3' -58.6 NC_003387.1 + 37212 0.66 0.519078
Target:  5'- aGGCGGUGCucauaaacGC-CGCCGUG-GGCGa -3'
miRNA:   3'- gUCGUCGCGuu------CGaGCGGCGCuUCGC- -5'
12886 3' -58.6 NC_003387.1 + 19298 0.66 0.519078
Target:  5'- gGGCAGCcCGauccAGCUCGgCGUGAccgaguacAGCGa -3'
miRNA:   3'- gUCGUCGcGU----UCGAGCgGCGCU--------UCGC- -5'
12886 3' -58.6 NC_003387.1 + 29820 0.66 0.519078
Target:  5'- -cGuCGGCGUccAGCUCGCCcGCGuAGCu -3'
miRNA:   3'- guC-GUCGCGu-UCGAGCGG-CGCuUCGc -5'
12886 3' -58.6 NC_003387.1 + 50593 0.66 0.519078
Target:  5'- uCAGgGGUGCcucguGCUCGCCGgucAGGCGg -3'
miRNA:   3'- -GUCgUCGCGuu---CGAGCGGCgc-UUCGC- -5'
12886 3' -58.6 NC_003387.1 + 21672 0.66 0.519078
Target:  5'- cCAGCAGCGCcgcgucGGcCUCGCUGaUGccGCGc -3'
miRNA:   3'- -GUCGUCGCGu-----UC-GAGCGGC-GCuuCGC- -5'
12886 3' -58.6 NC_003387.1 + 25254 0.66 0.519078
Target:  5'- gCGGCGGCGCcgGGGC-CaCCGCGccGAGCc -3'
miRNA:   3'- -GUCGUCGCG--UUCGaGcGGCGC--UUCGc -5'
12886 3' -58.6 NC_003387.1 + 32285 0.66 0.518034
Target:  5'- -nGCAGCGCGGcgucgcGCUCGUCgGUGAcgacgcgcagcucGGCGg -3'
miRNA:   3'- guCGUCGCGUU------CGAGCGG-CGCU-------------UCGC- -5'
12886 3' -58.6 NC_003387.1 + 30101 0.66 0.518034
Target:  5'- aCGGCGGCGCuGGCg-GCCuggGCGAuaccgaccagucgGGCGu -3'
miRNA:   3'- -GUCGUCGCGuUCGagCGG---CGCU-------------UCGC- -5'
12886 3' -58.6 NC_003387.1 + 18914 0.66 0.518034
Target:  5'- uCGGCGGCGCGcucgacccuacgcAGCUUcUCGCGAcggucGGCa -3'
miRNA:   3'- -GUCGUCGCGU-------------UCGAGcGGCGCU-----UCGc -5'
12886 3' -58.6 NC_003387.1 + 37380 0.66 0.512824
Target:  5'- gCGGCGGCGCcccgcugucgguaucGGGCauuuucaaCGUCGCGAuGGCGa -3'
miRNA:   3'- -GUCGUCGCG---------------UUCGa-------GCGGCGCU-UCGC- -5'
12886 3' -58.6 NC_003387.1 + 24877 0.66 0.508672
Target:  5'- cCGGCGGCGUggGC--GCCuCGggGgGg -3'
miRNA:   3'- -GUCGUCGCGuuCGagCGGcGCuuCgC- -5'
12886 3' -58.6 NC_003387.1 + 28881 0.66 0.508672
Target:  5'- uGGUGGCGUgcGCUucccaCGCCGCGguGUGc -3'
miRNA:   3'- gUCGUCGCGuuCGA-----GCGGCGCuuCGC- -5'
12886 3' -58.6 NC_003387.1 + 51827 0.66 0.508672
Target:  5'- gUAGUuGUGUAuGC-CGCCGCcGAGGCGc -3'
miRNA:   3'- -GUCGuCGCGUuCGaGCGGCG-CUUCGC- -5'
12886 3' -58.6 NC_003387.1 + 46977 0.66 0.508672
Target:  5'- gCGGCcGUGCAcgacgaccucgGGCUgCGCCGCaggugGggGCGc -3'
miRNA:   3'- -GUCGuCGCGU-----------UCGA-GCGGCG-----CuuCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.