miRNA display CGI


Results 21 - 40 of 174 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12886 3' -58.6 NC_003387.1 + 24877 0.66 0.508672
Target:  5'- cCGGCGGCGUggGC--GCCuCGggGgGg -3'
miRNA:   3'- -GUCGUCGCGuuCGagCGGcGCuuCgC- -5'
12886 3' -58.6 NC_003387.1 + 35639 0.66 0.508672
Target:  5'- aGGCGGCcggGCGGGCacuggccgaccUCGaCCGCG-GGCGg -3'
miRNA:   3'- gUCGUCG---CGUUCG-----------AGC-GGCGCuUCGC- -5'
12886 3' -58.6 NC_003387.1 + 10508 0.66 0.508672
Target:  5'- uCAGCGGgGCGcucGGCUCG--GCGAuGCGg -3'
miRNA:   3'- -GUCGUCgCGU---UCGAGCggCGCUuCGC- -5'
12886 3' -58.6 NC_003387.1 + 46977 0.66 0.508672
Target:  5'- gCGGCcGUGCAcgacgaccucgGGCUgCGCCGCaggugGggGCGc -3'
miRNA:   3'- -GUCGuCGCGU-----------UCGA-GCGGCG-----CuuCGC- -5'
12886 3' -58.6 NC_003387.1 + 17497 0.66 0.499382
Target:  5'- aCAGCAGCGUuugaaacagccugacGGCgUCGCCG-GucGCGg -3'
miRNA:   3'- -GUCGUCGCGu--------------UCG-AGCGGCgCuuCGC- -5'
12886 3' -58.6 NC_003387.1 + 3807 0.66 0.498355
Target:  5'- cCGGCAaaagugccaacGCGC-AGCUCGCagGCGAuuuccGCGg -3'
miRNA:   3'- -GUCGU-----------CGCGuUCGAGCGg-CGCUu----CGC- -5'
12886 3' -58.6 NC_003387.1 + 21189 0.66 0.498355
Target:  5'- gAGCAgGUGCAcgccguGCUgGCCGCGuggaacAGCGu -3'
miRNA:   3'- gUCGU-CGCGUu-----CGAgCGGCGCu-----UCGC- -5'
12886 3' -58.6 NC_003387.1 + 38058 0.66 0.498355
Target:  5'- gGGCGGUgGCuGAGCgagCGCCGCGucacuguGCGc -3'
miRNA:   3'- gUCGUCG-CG-UUCGa--GCGGCGCuu-----CGC- -5'
12886 3' -58.6 NC_003387.1 + 33161 0.66 0.498355
Target:  5'- aCGGCGG-GCGAcgcgguuacGCUCGCgGCGcuuGGCGc -3'
miRNA:   3'- -GUCGUCgCGUU---------CGAGCGgCGCu--UCGC- -5'
12886 3' -58.6 NC_003387.1 + 37404 0.66 0.498355
Target:  5'- -cGCGGCGgGGGCUCGUccacggcaCGuCGgcGCGg -3'
miRNA:   3'- guCGUCGCgUUCGAGCG--------GC-GCuuCGC- -5'
12886 3' -58.6 NC_003387.1 + 40089 0.66 0.498355
Target:  5'- ----cGCGCGAGCgC-CCGCGggGCu -3'
miRNA:   3'- gucguCGCGUUCGaGcGGCGCuuCGc -5'
12886 3' -58.6 NC_003387.1 + 26702 0.66 0.488132
Target:  5'- uGGCAuccccCGCAugccguccAGCuUCGCCGCcGAGGCGu -3'
miRNA:   3'- gUCGUc----GCGU--------UCG-AGCGGCG-CUUCGC- -5'
12886 3' -58.6 NC_003387.1 + 30690 0.66 0.488132
Target:  5'- gCAcCGGCGgGGGCguuuucgugCGCCuGCGggGCGc -3'
miRNA:   3'- -GUcGUCGCgUUCGa--------GCGG-CGCuuCGC- -5'
12886 3' -58.6 NC_003387.1 + 4366 0.66 0.488132
Target:  5'- -cGCGGUGCGcuGCUCGCC-CGcGGCc -3'
miRNA:   3'- guCGUCGCGUu-CGAGCGGcGCuUCGc -5'
12886 3' -58.6 NC_003387.1 + 45595 0.66 0.488132
Target:  5'- cCAGCAcacCGUcAGCUCGCUGCGGcccuuGCa -3'
miRNA:   3'- -GUCGUc--GCGuUCGAGCGGCGCUu----CGc -5'
12886 3' -58.6 NC_003387.1 + 17155 0.66 0.488132
Target:  5'- cCGGCGgcccGCGCuGAGCUggugCGCCGCcuGGGCGg -3'
miRNA:   3'- -GUCGU----CGCG-UUCGA----GCGGCGc-UUCGC- -5'
12886 3' -58.6 NC_003387.1 + 46817 0.66 0.488132
Target:  5'- -cGCuGCGUuAGCUCGCUGcCGguGCa -3'
miRNA:   3'- guCGuCGCGuUCGAGCGGC-GCuuCGc -5'
12886 3' -58.6 NC_003387.1 + 50460 0.66 0.488132
Target:  5'- uCGGCGGUGUcgAGGC-CGCCGuCGGcgucgAGCGc -3'
miRNA:   3'- -GUCGUCGCG--UUCGaGCGGC-GCU-----UCGC- -5'
12886 3' -58.6 NC_003387.1 + 15902 0.66 0.478009
Target:  5'- aCAGCc-CGCAccccgAGCUgGCCGCGAuuaucGGUGa -3'
miRNA:   3'- -GUCGucGCGU-----UCGAgCGGCGCU-----UCGC- -5'
12886 3' -58.6 NC_003387.1 + 46163 0.66 0.478009
Target:  5'- uCGGCGGcCGUcuuGGGCUCGUCGuCGAcccgcucaAGCGc -3'
miRNA:   3'- -GUCGUC-GCG---UUCGAGCGGC-GCU--------UCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.