miRNA display CGI


Results 1 - 20 of 174 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12886 3' -58.6 NC_003387.1 + 3204 1.08 0.000479
Target:  5'- cCAGCAGCGCAAGCUCGCCGCGAAGCGu -3'
miRNA:   3'- -GUCGUCGCGUUCGAGCGGCGCUUCGC- -5'
12886 3' -58.6 NC_003387.1 + 46303 0.72 0.216618
Target:  5'- aGGCGGCGCAgcgGGC-CGCUGgGAAGgGc -3'
miRNA:   3'- gUCGUCGCGU---UCGaGCGGCgCUUCgC- -5'
12886 3' -58.6 NC_003387.1 + 4222 0.71 0.245991
Target:  5'- gAGCAGgauuaccUGCAGGCcCGCCGCGAcGGCc -3'
miRNA:   3'- gUCGUC-------GCGUUCGaGCGGCGCU-UCGc -5'
12886 3' -58.6 NC_003387.1 + 44385 0.66 0.519078
Target:  5'- cCGGUggucgacgaGGCG-AAGCUCGCCGCGGcugacGCu -3'
miRNA:   3'- -GUCG---------UCGCgUUCGAGCGGCGCUu----CGc -5'
12886 3' -58.6 NC_003387.1 + 36517 0.75 0.133327
Target:  5'- uGGCAGCGCAGGCUgaGCCcCGAcAGCa -3'
miRNA:   3'- gUCGUCGCGUUCGAg-CGGcGCU-UCGc -5'
12886 3' -58.6 NC_003387.1 + 41137 0.75 0.136677
Target:  5'- uGGCAGCGCGccgacGGC-CGCUGCGAgugucagGGCGa -3'
miRNA:   3'- gUCGUCGCGU-----UCGaGCGGCGCU-------UCGC- -5'
12886 3' -58.6 NC_003387.1 + 45433 0.74 0.15294
Target:  5'- aGGaCAuGCGCAAGCUCGCCGgGccuGCGc -3'
miRNA:   3'- gUC-GU-CGCGUUCGAGCGGCgCuu-CGC- -5'
12886 3' -58.6 NC_003387.1 + 49166 0.74 0.15294
Target:  5'- cCAGC-GCGCAGGCg-GUCGCGcAGGCGg -3'
miRNA:   3'- -GUCGuCGCGUUCGagCGGCGC-UUCGC- -5'
12886 3' -58.6 NC_003387.1 + 39737 0.73 0.177031
Target:  5'- -cGCAGCGCGagauuaucgacgaccAGCUCGCCGaCGcGGUGc -3'
miRNA:   3'- guCGUCGCGU---------------UCGAGCGGC-GCuUCGC- -5'
12886 3' -58.6 NC_003387.1 + 33205 0.72 0.216618
Target:  5'- -cGCAGCGCAAGCgCGaggcCCGCucGGCGa -3'
miRNA:   3'- guCGUCGCGUUCGaGC----GGCGcuUCGC- -5'
12886 3' -58.6 NC_003387.1 + 5517 0.73 0.184792
Target:  5'- gAGCAGCG---GCUCGcCCGCGAgcgGGCGa -3'
miRNA:   3'- gUCGUCGCguuCGAGC-GGCGCU---UCGC- -5'
12886 3' -58.6 NC_003387.1 + 48770 0.73 0.170019
Target:  5'- gCGGUgcucGGCGCAgccAGCUCGCCGCuGAucgccgcGGCGg -3'
miRNA:   3'- -GUCG----UCGCGU---UCGAGCGGCG-CU-------UCGC- -5'
12886 3' -58.6 NC_003387.1 + 26722 0.76 0.103763
Target:  5'- -cGCGGCGCGAGCUgGaUCGCGAccccGGCGa -3'
miRNA:   3'- guCGUCGCGUUCGAgC-GGCGCU----UCGC- -5'
12886 3' -58.6 NC_003387.1 + 33754 0.72 0.205518
Target:  5'- cCGGCaAGgGCAacGGCggCGCCGCG-AGCGg -3'
miRNA:   3'- -GUCG-UCgCGU--UCGa-GCGGCGCuUCGC- -5'
12886 3' -58.6 NC_003387.1 + 472 0.76 0.116054
Target:  5'- aCGGCgaccGGCGCGAgcuGCUCGUCGCGAuGCGc -3'
miRNA:   3'- -GUCG----UCGCGUU---CGAGCGGCGCUuCGC- -5'
12886 3' -58.6 NC_003387.1 + 11446 0.74 0.161495
Target:  5'- -uGCccGCGCugcAGCUCGCCGCcGggGCGc -3'
miRNA:   3'- guCGu-CGCGu--UCGAGCGGCG-CuuCGC- -5'
12886 3' -58.6 NC_003387.1 + 41975 0.72 0.211005
Target:  5'- gAGCuGCGCGcggaGGC-CGCCGCGGugcucaAGCGg -3'
miRNA:   3'- gUCGuCGCGU----UCGaGCGGCGCU------UCGC- -5'
12886 3' -58.6 NC_003387.1 + 28210 0.71 0.234227
Target:  5'- -uGCAGCucgGCAAGCgcaGCCGCGAcGGCu -3'
miRNA:   3'- guCGUCG---CGUUCGag-CGGCGCU-UCGc -5'
12886 3' -58.6 NC_003387.1 + 632 0.75 0.129693
Target:  5'- gGGCAGCGUc-GC-CGCCGCGGcAGCGa -3'
miRNA:   3'- gUCGUCGCGuuCGaGCGGCGCU-UCGC- -5'
12886 3' -58.6 NC_003387.1 + 9538 0.74 0.144799
Target:  5'- gCGGUgccuGCGCAAGC-CGCCGCcGggGUGg -3'
miRNA:   3'- -GUCGu---CGCGUUCGaGCGGCG-CuuCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.