miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12886 5' -55.4 NC_003387.1 + 46004 0.66 0.707143
Target:  5'- gGGCGAGUCGacGGuG-AACUGCccGCGg -3'
miRNA:   3'- -CCGCUCAGUacCCuCgUUGACGa-CGC- -5'
12886 5' -55.4 NC_003387.1 + 49627 0.66 0.695183
Target:  5'- cGGCGAGgccguaaUCggGGuGAGCcuGCUcggGCUGCGa -3'
miRNA:   3'- -CCGCUC-------AGuaCC-CUCGu-UGA---CGACGC- -5'
12886 5' -55.4 NC_003387.1 + 31737 0.66 0.652278
Target:  5'- aGGCGAGUUagGGGuGUccCUGCU-CGa -3'
miRNA:   3'- -CCGCUCAGuaCCCuCGuuGACGAcGC- -5'
12886 5' -55.4 NC_003387.1 + 48179 0.66 0.652278
Target:  5'- cGGCGAGcCAccgcGGGcGCAGCgGCaGCGc -3'
miRNA:   3'- -CCGCUCaGUa---CCCuCGUUGaCGaCGC- -5'
12886 5' -55.4 NC_003387.1 + 51538 0.67 0.641205
Target:  5'- cGCGGuGUCGguUGcGGuGCGGCUGCgcgGCGu -3'
miRNA:   3'- cCGCU-CAGU--AC-CCuCGUUGACGa--CGC- -5'
12886 5' -55.4 NC_003387.1 + 8207 0.67 0.607977
Target:  5'- aGCGAcGUCGUGcguuuGGAGCGcaacgccgauCUGCUGCa -3'
miRNA:   3'- cCGCU-CAGUAC-----CCUCGUu---------GACGACGc -5'
12886 5' -55.4 NC_003387.1 + 26308 0.68 0.574937
Target:  5'- cGGCGA-UCGccGGGGCGAC-GCUGUGa -3'
miRNA:   3'- -CCGCUcAGUacCCUCGUUGaCGACGC- -5'
12886 5' -55.4 NC_003387.1 + 20953 0.7 0.41986
Target:  5'- gGGCGGGUCAUccgggcaggGGcGGGCAAC-GCcGCGa -3'
miRNA:   3'- -CCGCUCAGUA---------CC-CUCGUUGaCGaCGC- -5'
12886 5' -55.4 NC_003387.1 + 3861 0.71 0.391912
Target:  5'- cGGCGGGUUGcUGGcGGGCGgGCUGCUcgGCGu -3'
miRNA:   3'- -CCGCUCAGU-ACC-CUCGU-UGACGA--CGC- -5'
12886 5' -55.4 NC_003387.1 + 25375 0.72 0.365205
Target:  5'- cGGCGAgGUCGaGGGGcuGCGGCUGCU-CGa -3'
miRNA:   3'- -CCGCU-CAGUaCCCU--CGUUGACGAcGC- -5'
12886 5' -55.4 NC_003387.1 + 39656 0.72 0.331597
Target:  5'- cGCGcauGG-CGUGGGAGCAGCaGCUcGCGa -3'
miRNA:   3'- cCGC---UCaGUACCCUCGUUGaCGA-CGC- -5'
12886 5' -55.4 NC_003387.1 + 3240 1.11 0.000678
Target:  5'- cGGCGAGUCAUGGGAGCAACUGCUGCGc -3'
miRNA:   3'- -CCGCUCAGUACCCUCGUUGACGACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.