miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12887 3' -57.4 NC_003387.1 + 42591 0.66 0.602825
Target:  5'- -gGGCcgCGUgAUCGGUCGCCCaGGCgaaUGCg -3'
miRNA:   3'- ugCCGa-GCA-UAGUCGGCGGG-CUG---AUG- -5'
12887 3' -57.4 NC_003387.1 + 10426 0.66 0.602825
Target:  5'- uACGGCUCGcggcUGUCGGCgGgcaUCGACaGCg -3'
miRNA:   3'- -UGCCGAGC----AUAGUCGgCg--GGCUGaUG- -5'
12887 3' -57.4 NC_003387.1 + 40148 0.66 0.602825
Target:  5'- cACGGCgacaccGUCGGCgGCCCGAUc-- -3'
miRNA:   3'- -UGCCGagca--UAGUCGgCGGGCUGaug -5'
12887 3' -57.4 NC_003387.1 + 35726 0.66 0.601736
Target:  5'- cGCGG-UCGagGUCGGCCagugcccGCCCGGCcGCc -3'
miRNA:   3'- -UGCCgAGCa-UAGUCGG-------CGGGCUGaUG- -5'
12887 3' -57.4 NC_003387.1 + 38161 0.66 0.593033
Target:  5'- cCGGCUCGUcgagguuUCAGCaguacaagcgcaacgGCCCGGCcGCc -3'
miRNA:   3'- uGCCGAGCAu------AGUCGg--------------CGGGCUGaUG- -5'
12887 3' -57.4 NC_003387.1 + 37292 0.66 0.591946
Target:  5'- gGCGcGCUCGUcggcgcggucGUCGaCCGCgCCGACgUGCc -3'
miRNA:   3'- -UGC-CGAGCA----------UAGUcGGCG-GGCUG-AUG- -5'
12887 3' -57.4 NC_003387.1 + 25601 0.66 0.591946
Target:  5'- cACGGcCUCGacccgCAGUgccucgugaauaCGCCCGACUGg -3'
miRNA:   3'- -UGCC-GAGCaua--GUCG------------GCGGGCUGAUg -5'
12887 3' -57.4 NC_003387.1 + 27768 0.66 0.581101
Target:  5'- cGCGGaggccCUCGUGUCgcuAGCUGaCCGGCUGa -3'
miRNA:   3'- -UGCC-----GAGCAUAG---UCGGCgGGCUGAUg -5'
12887 3' -57.4 NC_003387.1 + 30638 0.66 0.581101
Target:  5'- cACGGCgCGUAcCGGCCGCggCGGCg-- -3'
miRNA:   3'- -UGCCGaGCAUaGUCGGCGg-GCUGaug -5'
12887 3' -57.4 NC_003387.1 + 20350 0.66 0.581101
Target:  5'- uCGGCUCGgaacugCAGCCcgaaaaacccgGCCCGAaaGCc -3'
miRNA:   3'- uGCCGAGCaua---GUCGG-----------CGGGCUgaUG- -5'
12887 3' -57.4 NC_003387.1 + 41447 0.66 0.578937
Target:  5'- cCGGCgCGgcccugacGCCGCCCuGACUGCc -3'
miRNA:   3'- uGCCGaGCauagu---CGGCGGG-CUGAUG- -5'
12887 3' -57.4 NC_003387.1 + 18024 0.66 0.570298
Target:  5'- cGCGGCU-GUA-CAGCgUGCCCGAg-GCg -3'
miRNA:   3'- -UGCCGAgCAUaGUCG-GCGGGCUgaUG- -5'
12887 3' -57.4 NC_003387.1 + 34402 0.66 0.570298
Target:  5'- uCGGCUgCGacggGUCGGCCGCgggcagcgCgGGCUGCu -3'
miRNA:   3'- uGCCGA-GCa---UAGUCGGCG--------GgCUGAUG- -5'
12887 3' -57.4 NC_003387.1 + 4735 0.66 0.570298
Target:  5'- gGCGGC----GUCGGCCGCuuGGCg-- -3'
miRNA:   3'- -UGCCGagcaUAGUCGGCGggCUGaug -5'
12887 3' -57.4 NC_003387.1 + 10744 0.66 0.570298
Target:  5'- gGCGGC-CGUGgucgCAGCCGCgUCGAg--- -3'
miRNA:   3'- -UGCCGaGCAUa---GUCGGCG-GGCUgaug -5'
12887 3' -57.4 NC_003387.1 + 45965 0.66 0.570298
Target:  5'- gGCGGCaggUCG-AUCGcCCGCUCGGCcGCg -3'
miRNA:   3'- -UGCCG---AGCaUAGUcGGCGGGCUGaUG- -5'
12887 3' -57.4 NC_003387.1 + 31267 0.66 0.559544
Target:  5'- -aGGCgcgCGUcgCGuucgacguGCCGCCCGGCa-- -3'
miRNA:   3'- ugCCGa--GCAuaGU--------CGGCGGGCUGaug -5'
12887 3' -57.4 NC_003387.1 + 38134 0.66 0.548848
Target:  5'- cGCGGCgcUCGc-UCAGCCaccGCCCGAUcgggGCg -3'
miRNA:   3'- -UGCCG--AGCauAGUCGG---CGGGCUGa---UG- -5'
12887 3' -57.4 NC_003387.1 + 8531 0.66 0.548848
Target:  5'- cCGGCUCGcggguaGUUAGuuGCCCGcGCggGCa -3'
miRNA:   3'- uGCCGAGCa-----UAGUCggCGGGC-UGa-UG- -5'
12887 3' -57.4 NC_003387.1 + 25171 0.66 0.548848
Target:  5'- uCGGCUCGgcgCGGUgGCcCCGGCg-- -3'
miRNA:   3'- uGCCGAGCauaGUCGgCG-GGCUGaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.