miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12888 3' -59.5 NC_003387.1 + 40680 0.66 0.511765
Target:  5'- cCGGCCCGccucgaaauGCGGUGuGCUacuugaccAUGCCGAGc -3'
miRNA:   3'- -GCUGGGC---------CGUCAC-CGAgu------UGCGGCUC- -5'
12888 3' -59.5 NC_003387.1 + 23727 0.66 0.511765
Target:  5'- aCGACUCGGCGcaGGCgaucCAGCgGUCGGGc -3'
miRNA:   3'- -GCUGGGCCGUcaCCGa---GUUG-CGGCUC- -5'
12888 3' -59.5 NC_003387.1 + 40119 0.66 0.511765
Target:  5'- gCGGCCCGGCGucgGGCaaguUCAAgGCCc-- -3'
miRNA:   3'- -GCUGGGCCGUca-CCG----AGUUgCGGcuc -5'
12888 3' -59.5 NC_003387.1 + 30492 0.66 0.511765
Target:  5'- uCGGCgCCGGUcgAGUGGaccgucggCAACGUCGAc -3'
miRNA:   3'- -GCUG-GGCCG--UCACCga------GUUGCGGCUc -5'
12888 3' -59.5 NC_003387.1 + 31048 0.66 0.511765
Target:  5'- aCGGCaCCGGCGccgaUGGCaccggCGACGgCGAGu -3'
miRNA:   3'- -GCUG-GGCCGUc---ACCGa----GUUGCgGCUC- -5'
12888 3' -59.5 NC_003387.1 + 45854 0.66 0.511765
Target:  5'- gCGGCCUGcGCAGcGGCgggcaGGCGCCa-- -3'
miRNA:   3'- -GCUGGGC-CGUCaCCGag---UUGCGGcuc -5'
12888 3' -59.5 NC_003387.1 + 25261 0.66 0.511765
Target:  5'- -uGCCgCGGCGGcGGCgccggggcCAccGCGCCGAGc -3'
miRNA:   3'- gcUGG-GCCGUCaCCGa-------GU--UGCGGCUC- -5'
12888 3' -59.5 NC_003387.1 + 3979 0.66 0.501627
Target:  5'- aGcACCCaGGCGGUcagggucgGGCagCGGCGCCGGu -3'
miRNA:   3'- gC-UGGG-CCGUCA--------CCGa-GUUGCGGCUc -5'
12888 3' -59.5 NC_003387.1 + 52465 0.66 0.501627
Target:  5'- uCGGCCUGGUAGUcgauuGGCUCGcCGCa--- -3'
miRNA:   3'- -GCUGGGCCGUCA-----CCGAGUuGCGgcuc -5'
12888 3' -59.5 NC_003387.1 + 4400 0.66 0.501627
Target:  5'- uCGACuaCUGGCAGaacgUCGACGCCGAGc -3'
miRNA:   3'- -GCUG--GGCCGUCaccgAGUUGCGGCUC- -5'
12888 3' -59.5 NC_003387.1 + 47177 0.66 0.491577
Target:  5'- uGGCCCuGGUGGUcgcccucggGGCUCAGguggcCGCCGGu -3'
miRNA:   3'- gCUGGG-CCGUCA---------CCGAGUU-----GCGGCUc -5'
12888 3' -59.5 NC_003387.1 + 42426 0.66 0.491577
Target:  5'- aGGCCCGcaaGGUcgucaccgagcGGUUCAAgGCCGAGu -3'
miRNA:   3'- gCUGGGCcg-UCA-----------CCGAGUUgCGGCUC- -5'
12888 3' -59.5 NC_003387.1 + 48109 0.66 0.491577
Target:  5'- -cGCCC-GCGGUGGCU---CGCCGAu -3'
miRNA:   3'- gcUGGGcCGUCACCGAguuGCGGCUc -5'
12888 3' -59.5 NC_003387.1 + 23934 0.66 0.491577
Target:  5'- -uGCCCGGC--UGGCUCGA--CCGGGg -3'
miRNA:   3'- gcUGGGCCGucACCGAGUUgcGGCUC- -5'
12888 3' -59.5 NC_003387.1 + 19930 0.66 0.481622
Target:  5'- uCGACCaGGC--UGGCaccUCGACGUCGGGc -3'
miRNA:   3'- -GCUGGgCCGucACCG---AGUUGCGGCUC- -5'
12888 3' -59.5 NC_003387.1 + 33699 0.66 0.471766
Target:  5'- gCGACCgGcggugugacGCAGUGGCUUAGCucGCUGGc -3'
miRNA:   3'- -GCUGGgC---------CGUCACCGAGUUG--CGGCUc -5'
12888 3' -59.5 NC_003387.1 + 44380 0.66 0.471766
Target:  5'- aCGACCCGGUGGUcgacgaGGCgaagcuCGCCGcGg -3'
miRNA:   3'- -GCUGGGCCGUCA------CCGaguu--GCGGCuC- -5'
12888 3' -59.5 NC_003387.1 + 51778 0.66 0.471766
Target:  5'- -cGCCCGaCuGGUGGCUgGGCGUCGAu -3'
miRNA:   3'- gcUGGGCcG-UCACCGAgUUGCGGCUc -5'
12888 3' -59.5 NC_003387.1 + 3807 0.66 0.471766
Target:  5'- aCGACgCCGaCAGguacgGGUcgaUCAGCGCCGGa -3'
miRNA:   3'- -GCUG-GGCcGUCa----CCG---AGUUGCGGCUc -5'
12888 3' -59.5 NC_003387.1 + 8484 0.66 0.471766
Target:  5'- cCGGCgguuagcuaCGGCGGgcgGGCUUGAgGCCGAu -3'
miRNA:   3'- -GCUGg--------GCCGUCa--CCGAGUUgCGGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.