miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12888 5' -54.3 NC_003387.1 + 17467 0.66 0.759145
Target:  5'- uGCGCAGCaaggacgaucccGGCGGCaUGGCcgCGACu -3'
miRNA:   3'- uCGCGUUGcau---------UCGCUG-ACCGa-GCUG- -5'
12888 5' -54.3 NC_003387.1 + 32760 0.66 0.754958
Target:  5'- gGGUGUcgacGACGUGcGCGGCgagguucaGCUCGGCg -3'
miRNA:   3'- -UCGCG----UUGCAUuCGCUGac------CGAGCUG- -5'
12888 5' -54.3 NC_003387.1 + 28983 0.66 0.744401
Target:  5'- cGCGCAgcagauACGUGagGGCGccGCgccgGGaCUCGGCg -3'
miRNA:   3'- uCGCGU------UGCAU--UCGC--UGa---CC-GAGCUG- -5'
12888 5' -54.3 NC_003387.1 + 32727 0.66 0.744401
Target:  5'- cGGCGC-ACGgc-GCGG-UGGCcUCGGCg -3'
miRNA:   3'- -UCGCGuUGCauuCGCUgACCG-AGCUG- -5'
12888 5' -54.3 NC_003387.1 + 27160 0.66 0.733727
Target:  5'- gAGCGCGucGCG-AAGCuGCUGcccCUCGGCg -3'
miRNA:   3'- -UCGCGU--UGCaUUCGcUGACc--GAGCUG- -5'
12888 5' -54.3 NC_003387.1 + 1760 0.66 0.733727
Target:  5'- gAGCcCGGCGgcGGCG-CUGGCgccCGAg -3'
miRNA:   3'- -UCGcGUUGCauUCGCuGACCGa--GCUg -5'
12888 5' -54.3 NC_003387.1 + 43630 0.66 0.733727
Target:  5'- gAGCGCgAGCGggucGAGgGACUGGCg---- -3'
miRNA:   3'- -UCGCG-UUGCa---UUCgCUGACCGagcug -5'
12888 5' -54.3 NC_003387.1 + 18561 0.66 0.733727
Target:  5'- gAGCGCAAggcCGaGGGCGACgcccugGuGCUCGuCg -3'
miRNA:   3'- -UCGCGUU---GCaUUCGCUGa-----C-CGAGCuG- -5'
12888 5' -54.3 NC_003387.1 + 43009 0.66 0.733727
Target:  5'- gAGCGCGACcauGUugucGAGCGACcGGCgcugcaGGCu -3'
miRNA:   3'- -UCGCGUUG---CA----UUCGCUGaCCGag----CUG- -5'
12888 5' -54.3 NC_003387.1 + 51607 0.66 0.732654
Target:  5'- gGGCGCAGgGgcaaGGGUGGCcgucgacggggcaUGGCUCGuCg -3'
miRNA:   3'- -UCGCGUUgCa---UUCGCUG-------------ACCGAGCuG- -5'
12888 5' -54.3 NC_003387.1 + 30445 0.66 0.722947
Target:  5'- uGCGCAGCG--AGCuGCaGGCggUCGACu -3'
miRNA:   3'- uCGCGUUGCauUCGcUGaCCG--AGCUG- -5'
12888 5' -54.3 NC_003387.1 + 33759 0.66 0.722947
Target:  5'- aAGgGCAACGgcGGCGccGCgagcGGUUUGGCc -3'
miRNA:   3'- -UCgCGUUGCauUCGC--UGa---CCGAGCUG- -5'
12888 5' -54.3 NC_003387.1 + 14938 0.66 0.722947
Target:  5'- cGGCGCAGCGgcgcauccccGGUGGuaucGGUUCGACg -3'
miRNA:   3'- -UCGCGUUGCau--------UCGCUga--CCGAGCUG- -5'
12888 5' -54.3 NC_003387.1 + 30960 0.66 0.712074
Target:  5'- aAGCGCAGCGUGuggacaccGGCGcACcaGGUgcCGACg -3'
miRNA:   3'- -UCGCGUUGCAU--------UCGC-UGa-CCGa-GCUG- -5'
12888 5' -54.3 NC_003387.1 + 34031 0.66 0.712074
Target:  5'- uGCGCGACccgcaccugGUcGGCGugUGGggCGGCc -3'
miRNA:   3'- uCGCGUUG---------CAuUCGCugACCgaGCUG- -5'
12888 5' -54.3 NC_003387.1 + 25208 0.67 0.701119
Target:  5'- cAGCGCAucauggugcugACGUuuAGCGGCaccucGGC-CGACa -3'
miRNA:   3'- -UCGCGU-----------UGCAu-UCGCUGa----CCGaGCUG- -5'
12888 5' -54.3 NC_003387.1 + 20473 0.67 0.701119
Target:  5'- cGGCGCGGCGUuccGCGGgUGggguuuccGCUcCGACa -3'
miRNA:   3'- -UCGCGUUGCAuu-CGCUgAC--------CGA-GCUG- -5'
12888 5' -54.3 NC_003387.1 + 23875 0.67 0.701119
Target:  5'- cGGCGaccCGgu-GUGGCUGGC-CGACg -3'
miRNA:   3'- -UCGCguuGCauuCGCUGACCGaGCUG- -5'
12888 5' -54.3 NC_003387.1 + 29647 0.67 0.701119
Target:  5'- cGGCGCGA-GUAAcCGGCU-GCUCGAa -3'
miRNA:   3'- -UCGCGUUgCAUUcGCUGAcCGAGCUg -5'
12888 5' -54.3 NC_003387.1 + 12024 0.67 0.701119
Target:  5'- cGGCGCAuGCGgu-GUGGCagGGCaucgUCGACa -3'
miRNA:   3'- -UCGCGU-UGCauuCGCUGa-CCG----AGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.