miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12890 3' -54.5 NC_003387.1 + 44275 0.66 0.741027
Target:  5'- cCGcgCC-GCGCgGUGGCUcgcCGUGUCu -3'
miRNA:   3'- aGCuaGGcCGCGgCACUGAa--GUACAG- -5'
12890 3' -54.5 NC_003387.1 + 14890 0.66 0.73044
Target:  5'- gUGAUCgUGcGCGCCGUGGgUcgGUGUCg -3'
miRNA:   3'- aGCUAG-GC-CGCGGCACUgAagUACAG- -5'
12890 3' -54.5 NC_003387.1 + 32505 0.66 0.73044
Target:  5'- cCGAUCUGGCGCUaa-ACUcuGUGUCg -3'
miRNA:   3'- aGCUAGGCCGCGGcacUGAagUACAG- -5'
12890 3' -54.5 NC_003387.1 + 51492 0.67 0.687217
Target:  5'- uUCGAggCGGCGCCGcaGGCgcucgCcgGUCa -3'
miRNA:   3'- -AGCUagGCCGCGGCa-CUGaa---GuaCAG- -5'
12890 3' -54.5 NC_003387.1 + 23000 0.67 0.676249
Target:  5'- gUGuAUCCGGCGCCGcuaAUUUCG-GUCg -3'
miRNA:   3'- aGC-UAGGCCGCGGCac-UGAAGUaCAG- -5'
12890 3' -54.5 NC_003387.1 + 27924 0.68 0.643134
Target:  5'- gUCGAUCgUGGCGCCGcGGC----UGUCg -3'
miRNA:   3'- -AGCUAG-GCCGCGGCaCUGaaguACAG- -5'
12890 3' -54.5 NC_003387.1 + 32486 0.68 0.606611
Target:  5'- gUCGAccCCGGCGCCGUGgugcgacgacugccGCUgCGUG-Ca -3'
miRNA:   3'- -AGCUa-GGCCGCGGCAC--------------UGAaGUACaG- -5'
12890 3' -54.5 NC_003387.1 + 50308 0.69 0.565961
Target:  5'- cUCGAUCCgguaGGCGCCGUaaguccagguGACgcgCggGUCg -3'
miRNA:   3'- -AGCUAGG----CCGCGGCA----------CUGaa-GuaCAG- -5'
12890 3' -54.5 NC_003387.1 + 43389 0.69 0.555084
Target:  5'- ----cCCGGCGCUGUGAUcgCGUaGUCg -3'
miRNA:   3'- agcuaGGCCGCGGCACUGaaGUA-CAG- -5'
12890 3' -54.5 NC_003387.1 + 36409 0.7 0.533525
Target:  5'- aUCGAcaCCGGCGCCGagcUGcAUUUCGUGcCg -3'
miRNA:   3'- -AGCUa-GGCCGCGGC---AC-UGAAGUACaG- -5'
12890 3' -54.5 NC_003387.1 + 21480 0.71 0.470881
Target:  5'- cCGcgCCGGUcggGCCG-GGCUgguUCGUGUCg -3'
miRNA:   3'- aGCuaGGCCG---CGGCaCUGA---AGUACAG- -5'
12890 3' -54.5 NC_003387.1 + 13662 0.72 0.421661
Target:  5'- cUCGGUCgccgagGGCGCCGUcGACgcUAUGUCg -3'
miRNA:   3'- -AGCUAGg-----CCGCGGCA-CUGaaGUACAG- -5'
12890 3' -54.5 NC_003387.1 + 32793 0.72 0.421661
Target:  5'- cCGcgCCGuGCGCCGUGAagcccugugUCAUGUg -3'
miRNA:   3'- aGCuaGGC-CGCGGCACUga-------AGUACAg -5'
12890 3' -54.5 NC_003387.1 + 29448 0.75 0.272776
Target:  5'- gUCGucaCCGGCGCCGcUGACggUCAgGUCg -3'
miRNA:   3'- -AGCua-GGCCGCGGC-ACUGa-AGUaCAG- -5'
12890 3' -54.5 NC_003387.1 + 4767 1.11 0.000872
Target:  5'- gUCGAUCCGGCGCCGUGACUUCAUGUCg -3'
miRNA:   3'- -AGCUAGGCCGCGGCACUGAAGUACAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.