miRNA display CGI


Results 1 - 20 of 201 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12890 5' -57.3 NC_003387.1 + 30492 0.65 0.641982
Target:  5'- uCGGCGcCGGUCGaguggaccguCGGCAAcGUCGa -3'
miRNA:   3'- cGCCGCuGCCGGUguu-------GCCGUU-CAGC- -5'
12890 5' -57.3 NC_003387.1 + 48312 0.66 0.63334
Target:  5'- cGCGGcCGAcCGGgCGCGACacgaucguGCGGGUCa -3'
miRNA:   3'- -CGCC-GCU-GCCgGUGUUGc-------CGUUCAGc -5'
12890 5' -57.3 NC_003387.1 + 23420 0.66 0.63334
Target:  5'- cGCGGCGccugcgucauuGCGGgCAUGACGauuucGCAagaGGUCGg -3'
miRNA:   3'- -CGCCGC-----------UGCCgGUGUUGC-----CGU---UCAGC- -5'
12890 5' -57.3 NC_003387.1 + 9742 0.66 0.63334
Target:  5'- uGC-GCGGCGGUaa----GGCAAGUCGa -3'
miRNA:   3'- -CGcCGCUGCCGguguugCCGUUCAGC- -5'
12890 5' -57.3 NC_003387.1 + 28200 0.66 0.626857
Target:  5'- gGCGGCGACcugcagcucggcaaGcgcaGCCGCGACGGCucgaccgagcagaucGUCGa -3'
miRNA:   3'- -CGCCGCUG--------------C----CGGUGUUGCCGuu-------------CAGC- -5'
12890 5' -57.3 NC_003387.1 + 21742 0.66 0.622536
Target:  5'- uCGGCGAacacgugcuCGGCCGCcGCcGC-GGUCGa -3'
miRNA:   3'- cGCCGCU---------GCCGGUGuUGcCGuUCAGC- -5'
12890 5' -57.3 NC_003387.1 + 49645 0.66 0.622536
Target:  5'- cCGGCaGCGGgCGCAccuCGGCGAGg-- -3'
miRNA:   3'- cGCCGcUGCCgGUGUu--GCCGUUCagc -5'
12890 5' -57.3 NC_003387.1 + 8739 0.66 0.622536
Target:  5'- aCGGCGcauaccacaGGCCGcCAACGGUuucgAGGUCa -3'
miRNA:   3'- cGCCGCug-------CCGGU-GUUGCCG----UUCAGc -5'
12890 5' -57.3 NC_003387.1 + 12885 0.66 0.622536
Target:  5'- cUGGCGucaacgugaGCGGCCuCGACGGCGugggGGUg- -3'
miRNA:   3'- cGCCGC---------UGCCGGuGUUGCCGU----UCAgc -5'
12890 5' -57.3 NC_003387.1 + 4065 0.66 0.622536
Target:  5'- cGCcGCGACGaGuCCAUGAcCGcGCGGGUCGc -3'
miRNA:   3'- -CGcCGCUGC-C-GGUGUU-GC-CGUUCAGC- -5'
12890 5' -57.3 NC_003387.1 + 49887 0.66 0.622536
Target:  5'- cGCGGCa--GGCCGCGGgcgaGGCucucGUCGa -3'
miRNA:   3'- -CGCCGcugCCGGUGUUg---CCGuu--CAGC- -5'
12890 5' -57.3 NC_003387.1 + 45939 0.66 0.622536
Target:  5'- cGCGGCGcGCaGCCGCAGCagcucgcGCAGGaUCu -3'
miRNA:   3'- -CGCCGC-UGcCGGUGUUGc------CGUUC-AGc -5'
12890 5' -57.3 NC_003387.1 + 17332 0.66 0.622536
Target:  5'- uGCGGUGGCGcuucugcguGCCGCAAgguCGGCAAa--- -3'
miRNA:   3'- -CGCCGCUGC---------CGGUGUU---GCCGUUcagc -5'
12890 5' -57.3 NC_003387.1 + 27853 0.66 0.621456
Target:  5'- aGCcGCGGC-GCCACGAucgacacCGGCGcGGUCGa -3'
miRNA:   3'- -CGcCGCUGcCGGUGUU-------GCCGU-UCAGC- -5'
12890 5' -57.3 NC_003387.1 + 34481 0.66 0.616058
Target:  5'- gGCGGCGgauGCGGCCuACGaguacgcccgccgcuGCGGCGccgCGa -3'
miRNA:   3'- -CGCCGC---UGCCGG-UGU---------------UGCCGUucaGC- -5'
12890 5' -57.3 NC_003387.1 + 3574 0.66 0.611741
Target:  5'- gGCGGCGugaAUGGUaACGGCGGCGccugAGUUu -3'
miRNA:   3'- -CGCCGC---UGCCGgUGUUGCCGU----UCAGc -5'
12890 5' -57.3 NC_003387.1 + 26849 0.66 0.611741
Target:  5'- uCGGCGAgcugUGGaugCACcuCGGCGAGUCu -3'
miRNA:   3'- cGCCGCU----GCCg--GUGuuGCCGUUCAGc -5'
12890 5' -57.3 NC_003387.1 + 42680 0.66 0.611741
Target:  5'- gGgGGCGAgGGUCACcg-GGCGGGgcUCGg -3'
miRNA:   3'- -CgCCGCUgCCGGUGuugCCGUUC--AGC- -5'
12890 5' -57.3 NC_003387.1 + 714 0.66 0.611741
Target:  5'- -gGGCGuCGcuGCCGCGGCGGCGAc--- -3'
miRNA:   3'- cgCCGCuGC--CGGUGUUGCCGUUcagc -5'
12890 5' -57.3 NC_003387.1 + 21102 0.66 0.611741
Target:  5'- cUGGCGACGGUCagccauguugACAGCccGGCGcuGUCGc -3'
miRNA:   3'- cGCCGCUGCCGG----------UGUUG--CCGUu-CAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.