miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12891 3' -59.6 NC_003387.1 + 13801 0.66 0.472091
Target:  5'- aACCuGCgc-AGGCUGaucgcccuGCGCCGCCuGGGc -3'
miRNA:   3'- -UGGuCGaguUCCGAC--------UGCGGCGG-CUC- -5'
12891 3' -59.6 NC_003387.1 + 32608 0.66 0.472091
Target:  5'- uCCuGCUC-GGGCU--CGCCGCgGGGg -3'
miRNA:   3'- uGGuCGAGuUCCGAcuGCGGCGgCUC- -5'
12891 3' -59.6 NC_003387.1 + 45441 0.66 0.462226
Target:  5'- cGCaAGCUCGccGGGCcuGCGCCGUgGAGc -3'
miRNA:   3'- -UGgUCGAGU--UCCGacUGCGGCGgCUC- -5'
12891 3' -59.6 NC_003387.1 + 32048 0.66 0.462226
Target:  5'- uCgGGUcgCAAGuCUGuCGCCGCCGAGc -3'
miRNA:   3'- uGgUCGa-GUUCcGACuGCGGCGGCUC- -5'
12891 3' -59.6 NC_003387.1 + 45542 0.66 0.462226
Target:  5'- gGCCGuGCggCAAGGCgaucCGCCGCCa-- -3'
miRNA:   3'- -UGGU-CGa-GUUCCGacu-GCGGCGGcuc -5'
12891 3' -59.6 NC_003387.1 + 36717 0.66 0.462226
Target:  5'- uGCCA-CUCGGGG---GCGCCGUCGGGc -3'
miRNA:   3'- -UGGUcGAGUUCCgacUGCGGCGGCUC- -5'
12891 3' -59.6 NC_003387.1 + 34792 0.66 0.462226
Target:  5'- gACCAGCUCGgccAGGUc-GCGCCGCa--- -3'
miRNA:   3'- -UGGUCGAGU---UCCGacUGCGGCGgcuc -5'
12891 3' -59.6 NC_003387.1 + 21505 0.66 0.461245
Target:  5'- gACCAGC-CGuaGCUGcugcgccGgGCCGCCGGGg -3'
miRNA:   3'- -UGGUCGaGUucCGAC-------UgCGGCGGCUC- -5'
12891 3' -59.6 NC_003387.1 + 6814 0.66 0.45247
Target:  5'- -gCGGCUCAAGGCgcgGuuCGCCuacguGCUGGGu -3'
miRNA:   3'- ugGUCGAGUUCCGa--Cu-GCGG-----CGGCUC- -5'
12891 3' -59.6 NC_003387.1 + 45862 0.66 0.45247
Target:  5'- cGCgAGCUgCugcGGCUGcGCGCCgcgGCCGAGc -3'
miRNA:   3'- -UGgUCGA-Guu-CCGAC-UGCGG---CGGCUC- -5'
12891 3' -59.6 NC_003387.1 + 10773 0.66 0.45247
Target:  5'- cCCGGCUUGAuaccGGC-GGCcaCCGCCGAGg -3'
miRNA:   3'- uGGUCGAGUU----CCGaCUGc-GGCGGCUC- -5'
12891 3' -59.6 NC_003387.1 + 20094 0.66 0.45247
Target:  5'- aGCCAGCaccggaauacgUGAGGUcgaacGGCGCCGCgGAGa -3'
miRNA:   3'- -UGGUCGa----------GUUCCGa----CUGCGGCGgCUC- -5'
12891 3' -59.6 NC_003387.1 + 48932 0.66 0.45247
Target:  5'- uCCGGCUgcgcacCAGGGCgUGcACGCCgugcgucgcGCCGAGc -3'
miRNA:   3'- uGGUCGA------GUUCCG-AC-UGCGG---------CGGCUC- -5'
12891 3' -59.6 NC_003387.1 + 31118 0.66 0.442828
Target:  5'- cCCgAGCgCcAGGUgGGCGCCGcCCGAGa -3'
miRNA:   3'- uGG-UCGaGuUCCGaCUGCGGC-GGCUC- -5'
12891 3' -59.6 NC_003387.1 + 19770 0.66 0.442828
Target:  5'- cACgAGCUgCGAGGCgucGAacgaGCCGUCGAc -3'
miRNA:   3'- -UGgUCGA-GUUCCGa--CUg---CGGCGGCUc -5'
12891 3' -59.6 NC_003387.1 + 9379 0.66 0.442828
Target:  5'- gGCCgaGGCgaccccCGAGGCgggcaaGACGaUCGCCGAGg -3'
miRNA:   3'- -UGG--UCGa-----GUUCCGa-----CUGC-GGCGGCUC- -5'
12891 3' -59.6 NC_003387.1 + 43813 0.66 0.44187
Target:  5'- cGCCAacacGCUCGcGGGCucccgcaUGcCGCCGUCGAGc -3'
miRNA:   3'- -UGGU----CGAGU-UCCG-------ACuGCGGCGGCUC- -5'
12891 3' -59.6 NC_003387.1 + 41756 0.66 0.433303
Target:  5'- cGCCGGgUC-GGGUUGACGCCGaaCCa-- -3'
miRNA:   3'- -UGGUCgAGuUCCGACUGCGGC--GGcuc -5'
12891 3' -59.6 NC_003387.1 + 23906 0.66 0.433303
Target:  5'- -gCGGCUUAGGcGCgGGCGCCGggccaccgcCCGAGc -3'
miRNA:   3'- ugGUCGAGUUC-CGaCUGCGGC---------GGCUC- -5'
12891 3' -59.6 NC_003387.1 + 51610 0.66 0.423898
Target:  5'- gGCgGGCgcaGGGGCaaggGugGCCGUCGAc -3'
miRNA:   3'- -UGgUCGag-UUCCGa---CugCGGCGGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.