miRNA display CGI


Results 1 - 20 of 56 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12891 5' -55.9 NC_003387.1 + 25861 0.66 0.670561
Target:  5'- -gCCGCcgaGCGGcCGAGAAugucGAGCGGGUUg -3'
miRNA:   3'- uaGGCGc--UGCC-GCUUUU----CUCGCUCGA- -5'
12891 5' -55.9 NC_003387.1 + 45946 0.66 0.670561
Target:  5'- uGUUCGcCGACGGCccgcgcAAGGGCGAgGCg -3'
miRNA:   3'- -UAGGC-GCUGCCGcuu---UUCUCGCU-CGa -5'
12891 5' -55.9 NC_003387.1 + 12453 0.66 0.670561
Target:  5'- gGUUCGCuGGCGGCGGccuGGccGCGGGCc -3'
miRNA:   3'- -UAGGCG-CUGCCGCUuu-UCu-CGCUCGa -5'
12891 5' -55.9 NC_003387.1 + 26779 0.66 0.659509
Target:  5'- -gCCGCgcacGACGGCGucgacGAGcagcGCGAGCUg -3'
miRNA:   3'- uaGGCG----CUGCCGCuu---UUCu---CGCUCGA- -5'
12891 5' -55.9 NC_003387.1 + 28926 0.66 0.659509
Target:  5'- cUgCGCGGCGGCGAGGuucacgccuGAGUGucguguAGCUa -3'
miRNA:   3'- uAgGCGCUGCCGCUUUu--------CUCGC------UCGA- -5'
12891 5' -55.9 NC_003387.1 + 2106 0.66 0.648432
Target:  5'- cUCgGCGACGGCGGccgucggcggcAccGAGCaGGGCc -3'
miRNA:   3'- uAGgCGCUGCCGCU-----------UuuCUCG-CUCGa -5'
12891 5' -55.9 NC_003387.1 + 36805 0.66 0.637339
Target:  5'- -cUCGCaGACGGCGucGAGGcCGGGCa -3'
miRNA:   3'- uaGGCG-CUGCCGCuuUUCUcGCUCGa -5'
12891 5' -55.9 NC_003387.1 + 28228 0.66 0.637339
Target:  5'- -gCCGCGACGGCucGAccGAGCagaucgucGAGCg -3'
miRNA:   3'- uaGGCGCUGCCGc-UUuuCUCG--------CUCGa -5'
12891 5' -55.9 NC_003387.1 + 41235 0.66 0.636229
Target:  5'- cUCCGCGgugcaugGCGGCGAcAAGGucGUGAcGCUg -3'
miRNA:   3'- uAGGCGC-------UGCCGCUuUUCU--CGCU-CGA- -5'
12891 5' -55.9 NC_003387.1 + 30054 0.66 0.619585
Target:  5'- -aCCGCccacgagcgcgcccuGACGGCcgccGGGGCGAGCa -3'
miRNA:   3'- uaGGCG---------------CUGCCGcuuuUCUCGCUCGa -5'
12891 5' -55.9 NC_003387.1 + 38666 0.66 0.615149
Target:  5'- aAUCCGCacugguaccucGACGGCGGugucGAGUGaAGCg -3'
miRNA:   3'- -UAGGCG-----------CUGCCGCUuuu-CUCGC-UCGa -5'
12891 5' -55.9 NC_003387.1 + 37037 0.66 0.615149
Target:  5'- -gCCGgGcACGGCGAcacugacggccuGgcGAGCGGGCa -3'
miRNA:   3'- uaGGCgC-UGCCGCU------------UuuCUCGCUCGa -5'
12891 5' -55.9 NC_003387.1 + 11525 0.66 0.615149
Target:  5'- -gCCcCGGCGGCGAGcugcAGcGCGGGCa -3'
miRNA:   3'- uaGGcGCUGCCGCUUu---UCuCGCUCGa -5'
12891 5' -55.9 NC_003387.1 + 32924 0.66 0.611824
Target:  5'- aGUCgGCGAC-GCGGAAccgccccgccccgcGGuGCGGGCUg -3'
miRNA:   3'- -UAGgCGCUGcCGCUUU--------------UCuCGCUCGA- -5'
12891 5' -55.9 NC_003387.1 + 48793 0.67 0.591916
Target:  5'- -gCCGUGGCGGCGAucagccaggcccaAAAGAaccGCGuGGCg -3'
miRNA:   3'- uaGGCGCUGCCGCU-------------UUUCU---CGC-UCGa -5'
12891 5' -55.9 NC_003387.1 + 37418 0.67 0.582
Target:  5'- -gUCGCGAUGGCGAccAAGAGCcccaAGCc -3'
miRNA:   3'- uaGGCGCUGCCGCUu-UUCUCGc---UCGa -5'
12891 5' -55.9 NC_003387.1 + 5683 0.67 0.582
Target:  5'- cUCUGCGcagcaaggugGCGGCGGucAAGGGCGuGCc -3'
miRNA:   3'- uAGGCGC----------UGCCGCUu-UUCUCGCuCGa -5'
12891 5' -55.9 NC_003387.1 + 37702 0.67 0.578702
Target:  5'- -aCUGCGGCGGCGAuuaccucggcagugcGGuGCGGGUg -3'
miRNA:   3'- uaGGCGCUGCCGCUuu-------------UCuCGCUCGa -5'
12891 5' -55.9 NC_003387.1 + 201 0.67 0.571024
Target:  5'- -aUCGCGAgGGCGAccgcaucGAG-GCGGGCg -3'
miRNA:   3'- uaGGCGCUgCCGCUu------UUCuCGCUCGa -5'
12891 5' -55.9 NC_003387.1 + 27037 0.67 0.571024
Target:  5'- uGUUCGCGagGCGGCGGAAGcaugucGGCuGAGCUg -3'
miRNA:   3'- -UAGGCGC--UGCCGCUUUUc-----UCG-CUCGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.