miRNA display CGI


Results 1 - 20 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12892 3' -59.7 NC_003387.1 + 4393 0.65 0.5097
Target:  5'- aACGCCgUCGacuacuggcagaacGUCGAcgcCGAGCUGGgcaaggcguUCGCCg -3'
miRNA:   3'- -UGCGG-AGC--------------CGGCU---GCUCGACU---------AGCGG- -5'
12892 3' -59.7 NC_003387.1 + 11397 0.65 0.511726
Target:  5'- gGCGCCacgcuggccgcgaUCGGCCccGAgGuGCUG-UCGUCg -3'
miRNA:   3'- -UGCGG-------------AGCCGG--CUgCuCGACuAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 34614 0.66 0.472868
Target:  5'- gACGUCgucgagCgGGUCGACGGGCagcccgagGAUCGCg -3'
miRNA:   3'- -UGCGGa-----G-CCGGCUGCUCGa-------CUAGCGg -5'
12892 3' -59.7 NC_003387.1 + 237 0.66 0.469939
Target:  5'- uUGCCgUCGGCCagcaggcccagcucGGCGGcGCgGAUCGCg -3'
miRNA:   3'- uGCGG-AGCCGG--------------CUGCU-CGaCUAGCGg -5'
12892 3' -59.7 NC_003387.1 + 30502 0.66 0.463143
Target:  5'- cCGCCUCGGCCucgguuucacccGAC-AGCUcGGgcaGCCa -3'
miRNA:   3'- uGCGGAGCCGG------------CUGcUCGA-CUag-CGG- -5'
12892 3' -59.7 NC_003387.1 + 43420 0.66 0.463143
Target:  5'- gUGCCgcuccCGGCCcGCGAGCagGAaaUUGCCc -3'
miRNA:   3'- uGCGGa----GCCGGcUGCUCGa-CU--AGCGG- -5'
12892 3' -59.7 NC_003387.1 + 5505 0.66 0.463143
Target:  5'- gGCGcCCUCGGUcgaguuguccuCGGCGGGCU---UGCCu -3'
miRNA:   3'- -UGC-GGAGCCG-----------GCUGCUCGAcuaGCGG- -5'
12892 3' -59.7 NC_003387.1 + 10922 0.66 0.463143
Target:  5'- -aGaCCgCGGUCGGCGAGCUGGcgaaGCUc -3'
miRNA:   3'- ugC-GGaGCCGGCUGCUCGACUag--CGG- -5'
12892 3' -59.7 NC_003387.1 + 17276 0.66 0.463143
Target:  5'- cUGCCUCGGCCu-CGGccacuuucGCgccGUCGCCg -3'
miRNA:   3'- uGCGGAGCCGGcuGCU--------CGac-UAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 17842 0.66 0.463143
Target:  5'- uCGUUUCGGCCGACgccgugauGAGCgguGUgGCCc -3'
miRNA:   3'- uGCGGAGCCGGCUG--------CUCGac-UAgCGG- -5'
12892 3' -59.7 NC_003387.1 + 13775 0.66 0.472868
Target:  5'- cCGCCUgGGCCGcgcuCGGGaC-GAaCGCCg -3'
miRNA:   3'- uGCGGAgCCGGCu---GCUC-GaCUaGCGG- -5'
12892 3' -59.7 NC_003387.1 + 13732 0.66 0.472868
Target:  5'- gGCGcCCUCGG-CGAcCGAGCcgc-CGCCg -3'
miRNA:   3'- -UGC-GGAGCCgGCU-GCUCGacuaGCGG- -5'
12892 3' -59.7 NC_003387.1 + 22920 0.66 0.492619
Target:  5'- uGCGCCUUGcgcGCCGAuCGcguuGGC-GAUCGCg -3'
miRNA:   3'- -UGCGGAGC---CGGCU-GC----UCGaCUAGCGg -5'
12892 3' -59.7 NC_003387.1 + 19230 0.66 0.482694
Target:  5'- cGCGcCCUCGacagcGUCGACGAGCcac-CGCCc -3'
miRNA:   3'- -UGC-GGAGC-----CGGCUGCUCGacuaGCGG- -5'
12892 3' -59.7 NC_003387.1 + 21808 0.66 0.482694
Target:  5'- aGCGCCUCGGCgacgauuuccaCGaccaggucggcGCGGGCcGcgcUCGCCg -3'
miRNA:   3'- -UGCGGAGCCG-----------GC-----------UGCUCGaCu--AGCGG- -5'
12892 3' -59.7 NC_003387.1 + 25988 0.66 0.482694
Target:  5'- cGCGCUggUGGUCGGUGAGCg---CGCCg -3'
miRNA:   3'- -UGCGGa-GCCGGCUGCUCGacuaGCGG- -5'
12892 3' -59.7 NC_003387.1 + 37998 0.66 0.482694
Target:  5'- gUGCC-CGGCgGugccgagccacGCGGGCagcgGGUCGCCc -3'
miRNA:   3'- uGCGGaGCCGgC-----------UGCUCGa---CUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 44020 0.66 0.482694
Target:  5'- uCGCCgugcggCGGCgGGCGAcCUGAUUcCCg -3'
miRNA:   3'- uGCGGa-----GCCGgCUGCUcGACUAGcGG- -5'
12892 3' -59.7 NC_003387.1 + 45290 0.66 0.482694
Target:  5'- cACGCCacgaUCGGCCG-CGGGUcGAacggGCCg -3'
miRNA:   3'- -UGCGG----AGCCGGCuGCUCGaCUag--CGG- -5'
12892 3' -59.7 NC_003387.1 + 45717 0.66 0.482694
Target:  5'- gGCGCCaggCGGCCGAUcuucGCc--UCGCCg -3'
miRNA:   3'- -UGCGGa--GCCGGCUGcu--CGacuAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.