miRNA display CGI


Results 41 - 60 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12892 3' -59.7 NC_003387.1 + 21808 0.66 0.482694
Target:  5'- aGCGCCUCGGCgacgauuuccaCGaccaggucggcGCGGGCcGcgcUCGCCg -3'
miRNA:   3'- -UGCGGAGCCG-----------GC-----------UGCUCGaCu--AGCGG- -5'
12892 3' -59.7 NC_003387.1 + 24721 0.66 0.492619
Target:  5'- gGCGaCCUCGcGCagcagGGCGAgguGCgucgGGUCGCCc -3'
miRNA:   3'- -UGC-GGAGC-CGg----CUGCU---CGa---CUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 50392 0.66 0.472868
Target:  5'- -gGCCUCGacaccGCCGAgcuguacguCGGGCggcaGAUCGUCg -3'
miRNA:   3'- ugCGGAGC-----CGGCU---------GCUCGa---CUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 10110 0.66 0.492619
Target:  5'- cGCGcCCUCGGCgCGcuuCG-GCUcGUCGUCg -3'
miRNA:   3'- -UGC-GGAGCCG-GCu--GCuCGAcUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 25988 0.66 0.482694
Target:  5'- cGCGCUggUGGUCGGUGAGCg---CGCCg -3'
miRNA:   3'- -UGCGGa-GCCGGCUGCUCGacuaGCGG- -5'
12892 3' -59.7 NC_003387.1 + 16769 0.66 0.462176
Target:  5'- aACGUCUUGGgCGuguucucgucguaAUGcAGCuUGAUCGCCg -3'
miRNA:   3'- -UGCGGAGCCgGC-------------UGC-UCG-ACUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 34493 0.66 0.463143
Target:  5'- uGCGCaggaauGCCGGCGAgugcgucgucGCUGGUCGCg -3'
miRNA:   3'- -UGCGgagc--CGGCUGCU----------CGACUAGCGg -5'
12892 3' -59.7 NC_003387.1 + 17842 0.66 0.463143
Target:  5'- uCGUUUCGGCCGACgccgugauGAGCgguGUgGCCc -3'
miRNA:   3'- uGCGGAGCCGGCUG--------CUCGac-UAgCGG- -5'
12892 3' -59.7 NC_003387.1 + 22920 0.66 0.492619
Target:  5'- uGCGCCUUGcgcGCCGAuCGcguuGGC-GAUCGCg -3'
miRNA:   3'- -UGCGGAGC---CGGCU-GC----UCGaCUAGCGg -5'
12892 3' -59.7 NC_003387.1 + 24578 0.67 0.425337
Target:  5'- -gGCUgCGGCUGACGAaccGCcGGUCgGCCa -3'
miRNA:   3'- ugCGGaGCCGGCUGCU---CGaCUAG-CGG- -5'
12892 3' -59.7 NC_003387.1 + 37046 0.67 0.452567
Target:  5'- gGCGacaCUgaCGGCCuGGCGAGCgGGcauucguUCGCCg -3'
miRNA:   3'- -UGCg--GA--GCCGG-CUGCUCGaCU-------AGCGG- -5'
12892 3' -59.7 NC_003387.1 + 41466 0.67 0.453523
Target:  5'- uGCGCCUCGGUCGcCcGGCgc-UCgGCCu -3'
miRNA:   3'- -UGCGGAGCCGGCuGcUCGacuAG-CGG- -5'
12892 3' -59.7 NC_003387.1 + 35243 0.67 0.452567
Target:  5'- gGCGCC-CGcaaguacGCCGACGAcaaCUGG-CGCCg -3'
miRNA:   3'- -UGCGGaGC-------CGGCUGCUc--GACUaGCGG- -5'
12892 3' -59.7 NC_003387.1 + 36962 0.67 0.453523
Target:  5'- gACGCCgacgCGGUgcccguCGGCGAGCacaAUCGUCu -3'
miRNA:   3'- -UGCGGa---GCCG------GCUGCUCGac-UAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 2899 0.67 0.444014
Target:  5'- gGCGaucaaCUCGGUgaacuuCGACcGGCUGAUCGUg -3'
miRNA:   3'- -UGCg----GAGCCG------GCUGcUCGACUAGCGg -5'
12892 3' -59.7 NC_003387.1 + 17729 0.67 0.453523
Target:  5'- cACGCCUUGcccuuGUCGGuCGGGCcGAggcUCGCCu -3'
miRNA:   3'- -UGCGGAGC-----CGGCU-GCUCGaCU---AGCGG- -5'
12892 3' -59.7 NC_003387.1 + 44475 0.67 0.434617
Target:  5'- -aGCgUCaGCCGcgGCGAGCU--UCGCCu -3'
miRNA:   3'- ugCGgAGcCGGC--UGCUCGAcuAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 24885 0.67 0.434617
Target:  5'- -gGCCUUGaCCGGCG-GCgUGggCGCCu -3'
miRNA:   3'- ugCGGAGCcGGCUGCuCG-ACuaGCGG- -5'
12892 3' -59.7 NC_003387.1 + 706 0.67 0.444014
Target:  5'- cUGCCgCGG-CGGCGAcGCUGcccUCGCCc -3'
miRNA:   3'- uGCGGaGCCgGCUGCU-CGACu--AGCGG- -5'
12892 3' -59.7 NC_003387.1 + 29870 0.67 0.453523
Target:  5'- gACGCUaguccucgaUCGGCauGCGgucacgccguAGCUGAUCGUCa -3'
miRNA:   3'- -UGCGG---------AGCCGgcUGC----------UCGACUAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.