miRNA display CGI


Results 61 - 80 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12892 3' -59.7 NC_003387.1 + 24885 0.67 0.434617
Target:  5'- -gGCCUUGaCCGGCG-GCgUGggCGCCu -3'
miRNA:   3'- ugCGGAGCcGGCUGCuCG-ACuaGCGG- -5'
12892 3' -59.7 NC_003387.1 + 1114 0.67 0.444014
Target:  5'- aGCGCgggUUCGGCCGugG-GU---UCGCCg -3'
miRNA:   3'- -UGCG---GAGCCGGCugCuCGacuAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 706 0.67 0.444014
Target:  5'- cUGCCgCGG-CGGCGAcGCUGcccUCGCCc -3'
miRNA:   3'- uGCGGaGCCgGCUGCU-CGACu--AGCGG- -5'
12892 3' -59.7 NC_003387.1 + 20249 0.67 0.453523
Target:  5'- gGCGCCgucCGG-UGGCGAGCcgacGGUgGCCu -3'
miRNA:   3'- -UGCGGa--GCCgGCUGCUCGa---CUAgCGG- -5'
12892 3' -59.7 NC_003387.1 + 36962 0.67 0.453523
Target:  5'- gACGCCgacgCGGUgcccguCGGCGAGCacaAUCGUCu -3'
miRNA:   3'- -UGCGGa---GCCG------GCUGCUCGac-UAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 41466 0.67 0.453523
Target:  5'- uGCGCCUCGGUCGcCcGGCgc-UCgGCCu -3'
miRNA:   3'- -UGCGGAGCCGGCuGcUCGacuAG-CGG- -5'
12892 3' -59.7 NC_003387.1 + 32328 0.67 0.416176
Target:  5'- -gGCCUCGG-CGACGgccaGGC-GGUCgGCCa -3'
miRNA:   3'- ugCGGAGCCgGCUGC----UCGaCUAG-CGG- -5'
12892 3' -59.7 NC_003387.1 + 29870 0.67 0.453523
Target:  5'- gACGCUaguccucgaUCGGCauGCGgucacgccguAGCUGAUCGUCa -3'
miRNA:   3'- -UGCGG---------AGCCGgcUGC----------UCGACUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 44475 0.67 0.434617
Target:  5'- -aGCgUCaGCCGcgGCGAGCU--UCGCCu -3'
miRNA:   3'- ugCGgAGcCGGC--UGCUCGAcuAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 24490 0.67 0.407136
Target:  5'- cGCGUCcUGGCCGACcGGCgguUCGUCa -3'
miRNA:   3'- -UGCGGaGCCGGCUGcUCGacuAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 35719 0.67 0.434617
Target:  5'- -gGCCUgCcGCUGAcCGAGCUGGacgaaaUCGCCc -3'
miRNA:   3'- ugCGGA-GcCGGCU-GCUCGACU------AGCGG- -5'
12892 3' -59.7 NC_003387.1 + 30297 0.67 0.444014
Target:  5'- cGCGCCUgGGaCGACGcgcauuaccagGGCUGGcggCGCUu -3'
miRNA:   3'- -UGCGGAgCCgGCUGC-----------UCGACUa--GCGG- -5'
12892 3' -59.7 NC_003387.1 + 17729 0.67 0.453523
Target:  5'- cACGCCUUGcccuuGUCGGuCGGGCcGAggcUCGCCu -3'
miRNA:   3'- -UGCGGAGC-----CGGCU-GCUCGaCU---AGCGG- -5'
12892 3' -59.7 NC_003387.1 + 37046 0.67 0.452567
Target:  5'- gGCGacaCUgaCGGCCuGGCGAGCgGGcauucguUCGCCg -3'
miRNA:   3'- -UGCg--GA--GCCGG-CUGCUCGaCU-------AGCGG- -5'
12892 3' -59.7 NC_003387.1 + 18296 0.67 0.444014
Target:  5'- aGCGCCgaccCGGCCG-CGGcGgUGG-CGCCc -3'
miRNA:   3'- -UGCGGa---GCCGGCuGCU-CgACUaGCGG- -5'
12892 3' -59.7 NC_003387.1 + 2899 0.67 0.444014
Target:  5'- gGCGaucaaCUCGGUgaacuuCGACcGGCUGAUCGUg -3'
miRNA:   3'- -UGCg----GAGCCG------GCUGcUCGACUAGCGg -5'
12892 3' -59.7 NC_003387.1 + 35243 0.67 0.452567
Target:  5'- gGCGCC-CGcaaguacGCCGACGAcaaCUGG-CGCCg -3'
miRNA:   3'- -UGCGGaGC-------CGGCUGCUc--GACUaGCGG- -5'
12892 3' -59.7 NC_003387.1 + 19344 0.68 0.389432
Target:  5'- gGCGagaaCCU-GGCCgGGCGGGCUcuGGUUGCCa -3'
miRNA:   3'- -UGC----GGAgCCGG-CUGCUCGA--CUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 42016 0.68 0.389432
Target:  5'- cCGCCU-GGCCG-UGA--UGGUCGCCg -3'
miRNA:   3'- uGCGGAgCCGGCuGCUcgACUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 43913 0.68 0.389432
Target:  5'- -gGCCaaguUCGGgCG-CGAGCUGAgcgggaaucaggUCGCCc -3'
miRNA:   3'- ugCGG----AGCCgGCuGCUCGACU------------AGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.