miRNA display CGI


Results 81 - 100 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12892 3' -59.7 NC_003387.1 + 5875 0.68 0.398221
Target:  5'- uGCGCUUCGGUgGuGCGGGCggcuuguucUGGUcaCGCCa -3'
miRNA:   3'- -UGCGGAGCCGgC-UGCUCG---------ACUA--GCGG- -5'
12892 3' -59.7 NC_003387.1 + 40338 0.68 0.401772
Target:  5'- cGCGCagaUCGGUcugcacggucaCGACGAGCUGcaugcgggggcugccGUCGUCc -3'
miRNA:   3'- -UGCGg--AGCCG-----------GCUGCUCGAC---------------UAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 48763 0.68 0.39469
Target:  5'- cACGCacgCGGUgcuCGGCGcagccagcucgccGCUGAUCGCCg -3'
miRNA:   3'- -UGCGga-GCCG---GCUGCu------------CGACUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 10458 0.68 0.397337
Target:  5'- cGCGCUgUCGGUCGcCGguggcauGGC-GAUCGCCa -3'
miRNA:   3'- -UGCGG-AGCCGGCuGC-------UCGaCUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 33478 0.68 0.37224
Target:  5'- uCGCCgaggCGGUCGGCGcccGC-GAUCGCg -3'
miRNA:   3'- uGCGGa---GCCGGCUGCu--CGaCUAGCGg -5'
12892 3' -59.7 NC_003387.1 + 36211 0.68 0.37224
Target:  5'- gGCGCCUCGGCguaauCGAGgUcGUCGCa -3'
miRNA:   3'- -UGCGGAGCCGgcu--GCUCgAcUAGCGg -5'
12892 3' -59.7 NC_003387.1 + 26120 0.68 0.37224
Target:  5'- uGCGCCa-GGUCGGCGcGUccGUCGCCg -3'
miRNA:   3'- -UGCGGagCCGGCUGCuCGacUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 6430 0.68 0.38856
Target:  5'- gUGCCgaaaaugaCGGCCuGGuCGAGCUucuugccGAUCGCCu -3'
miRNA:   3'- uGCGGa-------GCCGG-CU-GCUCGA-------CUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 1294 0.68 0.389432
Target:  5'- uGCGCCUCGacGCCcuGGCGGGC-GA-CGUCg -3'
miRNA:   3'- -UGCGGAGC--CGG--CUGCUCGaCUaGCGG- -5'
12892 3' -59.7 NC_003387.1 + 10688 0.68 0.389432
Target:  5'- cCGCCUCGGCgGugGccGCcGGUaucaaGCCg -3'
miRNA:   3'- uGCGGAGCCGgCugCu-CGaCUAg----CGG- -5'
12892 3' -59.7 NC_003387.1 + 43667 0.68 0.379912
Target:  5'- uCGCCgaggaGGgCGACGcgauccuGGCgugGAUCGCCg -3'
miRNA:   3'- uGCGGag---CCgGCUGC-------UCGa--CUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 39384 0.68 0.398221
Target:  5'- cACGCCcucgccguugUCGGCCGG-GGGCUugccGUCGUCg -3'
miRNA:   3'- -UGCGG----------AGCCGGCUgCUCGAc---UAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 8475 0.68 0.354751
Target:  5'- -aGCUaCGGCgGGCGGGCUugaggccGAUCGUCc -3'
miRNA:   3'- ugCGGaGCCGgCUGCUCGA-------CUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 2126 0.68 0.355571
Target:  5'- gACGCCccagCGGCCGACGuGgaGuUCcCCg -3'
miRNA:   3'- -UGCGGa---GCCGGCUGCuCgaCuAGcGG- -5'
12892 3' -59.7 NC_003387.1 + 36739 0.68 0.37224
Target:  5'- -gGCCa-GGUCGGCGAGCcGGUgaUGCCa -3'
miRNA:   3'- ugCGGagCCGGCUGCUCGaCUA--GCGG- -5'
12892 3' -59.7 NC_003387.1 + 10076 0.68 0.380771
Target:  5'- uCGCC-CGGCCGcgggaACGGGUcgGGUgCGCCc -3'
miRNA:   3'- uGCGGaGCCGGC-----UGCUCGa-CUA-GCGG- -5'
12892 3' -59.7 NC_003387.1 + 22603 0.68 0.385952
Target:  5'- aGC-CCUCGGCCugggccagggucgcGGCGGGCaUGAUccauucgCGCCa -3'
miRNA:   3'- -UGcGGAGCCGG--------------CUGCUCG-ACUA-------GCGG- -5'
12892 3' -59.7 NC_003387.1 + 42016 0.68 0.389432
Target:  5'- cCGCCU-GGCCG-UGA--UGGUCGCCg -3'
miRNA:   3'- uGCGGAgCCGGCuGCUcgACUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 46167 0.68 0.398221
Target:  5'- cAUGUCggCGGCCGucuUGGGCUcGUCGUCg -3'
miRNA:   3'- -UGCGGa-GCCGGCu--GCUCGAcUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 19344 0.68 0.389432
Target:  5'- gGCGagaaCCU-GGCCgGGCGGGCUcuGGUUGCCa -3'
miRNA:   3'- -UGC----GGAgCCGG-CUGCUCGA--CUAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.