miRNA display CGI


Results 101 - 120 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12892 3' -59.7 NC_003387.1 + 36854 0.68 0.398221
Target:  5'- uGCGCgUCGGCCagcgcCGAGUgccGUCGCUg -3'
miRNA:   3'- -UGCGgAGCCGGcu---GCUCGac-UAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 39384 0.68 0.398221
Target:  5'- cACGCCcucgccguugUCGGCCGG-GGGCUugccGUCGUCg -3'
miRNA:   3'- -UGCGG----------AGCCGGCUgCUCGAc---UAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 36211 0.68 0.37224
Target:  5'- gGCGCCUCGGCguaauCGAGgUcGUCGCa -3'
miRNA:   3'- -UGCGGAGCCGgcu--GCUCgAcUAGCGg -5'
12892 3' -59.7 NC_003387.1 + 3611 0.68 0.37224
Target:  5'- gGCGUCcUGGCCGagcugaGCGGGCgugcggGuAUCGCCg -3'
miRNA:   3'- -UGCGGaGCCGGC------UGCUCGa-----C-UAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 13644 0.68 0.389432
Target:  5'- -gGCCaccgUCGG-CGGCG-GCUcGGUCGCCg -3'
miRNA:   3'- ugCGG----AGCCgGCUGCuCGA-CUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 10688 0.68 0.389432
Target:  5'- cCGCCUCGGCgGugGccGCcGGUaucaaGCCg -3'
miRNA:   3'- uGCGGAGCCGgCugCu-CGaCUAg----CGG- -5'
12892 3' -59.7 NC_003387.1 + 10751 0.69 0.350674
Target:  5'- cCGCCgaggCGGCCGugGucgcagccgcgucgaGGCcGAaCGCCg -3'
miRNA:   3'- uGCGGa---GCCGGCugC---------------UCGaCUaGCGG- -5'
12892 3' -59.7 NC_003387.1 + 37367 0.69 0.347436
Target:  5'- gACGaCCgc-GCCGACGAGCg---CGCCa -3'
miRNA:   3'- -UGC-GGagcCGGCUGCUCGacuaGCGG- -5'
12892 3' -59.7 NC_003387.1 + 9441 0.69 0.339435
Target:  5'- uCGCCUCGGCCGccACcGGCUcGUCGaCg -3'
miRNA:   3'- uGCGGAGCCGGC--UGcUCGAcUAGCgG- -5'
12892 3' -59.7 NC_003387.1 + 2031 0.69 0.323836
Target:  5'- cCGCCgaCGGCCGccgucgcCGAGCUGGcCGCg -3'
miRNA:   3'- uGCGGa-GCCGGCu------GCUCGACUaGCGg -5'
12892 3' -59.7 NC_003387.1 + 4661 0.69 0.319262
Target:  5'- gGCGCCaagCGGCCGAcgccgccaagcaagaCGAgguGCUGAaccUCGUCg -3'
miRNA:   3'- -UGCGGa--GCCGGCU---------------GCU---CGACU---AGCGG- -5'
12892 3' -59.7 NC_003387.1 + 39242 0.69 0.334698
Target:  5'- gGCGCCgggcgaGGCCGucgaguucgaccucgGCGAGCUGGgcaaGCUg -3'
miRNA:   3'- -UGCGGag----CCGGC---------------UGCUCGACUag--CGG- -5'
12892 3' -59.7 NC_003387.1 + 30181 0.69 0.347436
Target:  5'- uCGCCUCGGgcaaggagcagUCGcCGAGCcGGUaCGCCg -3'
miRNA:   3'- uGCGGAGCC-----------GGCuGCUCGaCUA-GCGG- -5'
12892 3' -59.7 NC_003387.1 + 47948 0.69 0.308778
Target:  5'- gACGCCgugugGGCCGcgaagcaccGCGAGCUGggCGgCa -3'
miRNA:   3'- -UGCGGag---CCGGC---------UGCUCGACuaGCgG- -5'
12892 3' -59.7 NC_003387.1 + 23379 0.69 0.347436
Target:  5'- -aGCUgauUCGggucGCCGACGAGCUGAacaUGCCc -3'
miRNA:   3'- ugCGG---AGC----CGGCUGCUCGACUa--GCGG- -5'
12892 3' -59.7 NC_003387.1 + 10375 0.69 0.308778
Target:  5'- cGCGUCcUGGCCuGCGcGCUGAgCGCCc -3'
miRNA:   3'- -UGCGGaGCCGGcUGCuCGACUaGCGG- -5'
12892 3' -59.7 NC_003387.1 + 52090 0.69 0.316239
Target:  5'- uCGCCUCgucgucgagGGCCGAcagguCGGGCaGGUgCGCCa -3'
miRNA:   3'- uGCGGAG---------CCGGCU-----GCUCGaCUA-GCGG- -5'
12892 3' -59.7 NC_003387.1 + 25893 0.69 0.316239
Target:  5'- cCGCC-CaGGCCGcCGAGCaGGcCGCCa -3'
miRNA:   3'- uGCGGaG-CCGGCuGCUCGaCUaGCGG- -5'
12892 3' -59.7 NC_003387.1 + 48218 0.69 0.331568
Target:  5'- -gGCCUCGG-UGGCGcGCUGcgCGCg -3'
miRNA:   3'- ugCGGAGCCgGCUGCuCGACuaGCGg -5'
12892 3' -59.7 NC_003387.1 + 52610 0.69 0.339435
Target:  5'- gACGCC-CGGCCGccagcucgGCG-GCUuGUCGCUc -3'
miRNA:   3'- -UGCGGaGCCGGC--------UGCuCGAcUAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.