Results 41 - 60 of 200 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12892 | 3' | -59.7 | NC_003387.1 | + | 16386 | 0.72 | 0.218221 |
Target: 5'- -gGCCa-GGCCGACGAcacGCUGAUgGCg -3' miRNA: 3'- ugCGGagCCGGCUGCU---CGACUAgCGg -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 5211 | 0.72 | 0.201516 |
Target: 5'- gGCGCCUCGGguaCCGcACGAugcugcucgacauGCUGAacaacUCGCCc -3' miRNA: 3'- -UGCGGAGCC---GGC-UGCU-------------CGACU-----AGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 28229 | 0.72 | 0.218221 |
Target: 5'- cCGCgaCGGCuCGAcCGAGCaGAUCGUCg -3' miRNA: 3'- uGCGgaGCCG-GCU-GCUCGaCUAGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 9369 | 0.71 | 0.252018 |
Target: 5'- -aGCCgguggCGGCCGaggcgacccccgagGCGGGCaagacGAUCGCCg -3' miRNA: 3'- ugCGGa----GCCGGC--------------UGCUCGa----CUAGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 5332 | 0.71 | 0.260306 |
Target: 5'- aACGCCuaaUCGGCCGGUGAuGCUGAcgaGCUa -3' miRNA: 3'- -UGCGG---AGCCGGCUGCU-CGACUag-CGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 21689 | 0.71 | 0.260306 |
Target: 5'- gACGCCcUGGCCGccucgGCGAGCgcgGcccgCGCCg -3' miRNA: 3'- -UGCGGaGCCGGC-----UGCUCGa--Cua--GCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 49309 | 0.71 | 0.229616 |
Target: 5'- cACGCCgagggcaCGGCCc-CGAGCaUGAUCGCg -3' miRNA: 3'- -UGCGGa------GCCGGcuGCUCG-ACUAGCGg -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 41811 | 0.71 | 0.247026 |
Target: 5'- cACGCCU-GGCagaucauCGACGAGCUGAgcauccuggUCgGCCa -3' miRNA: 3'- -UGCGGAgCCG-------GCUGCUCGACU---------AG-CGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 50239 | 0.71 | 0.231954 |
Target: 5'- gGCGCCUaccggaucgaggaggUGGCCGACGuGCgcaccgaggUGAUCGUg -3' miRNA: 3'- -UGCGGA---------------GCCGGCUGCuCG---------ACUAGCGg -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 27560 | 0.71 | 0.229616 |
Target: 5'- cCGCCUCgGGCCGcugacACGAGCcccGAUCGgCu -3' miRNA: 3'- uGCGGAG-CCGGC-----UGCUCGa--CUAGCgG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 40621 | 0.71 | 0.253911 |
Target: 5'- aACGCCUCGGgggucaCGcccuCGGGCaGGUCGCUg -3' miRNA: 3'- -UGCGGAGCCg-----GCu---GCUCGaCUAGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 50105 | 0.71 | 0.229616 |
Target: 5'- uCGCCgaGGCCcGCGAGCgccuggucacGAUCGCCg -3' miRNA: 3'- uGCGGagCCGGcUGCUCGa---------CUAGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 4555 | 0.71 | 0.247646 |
Target: 5'- gGCGaCUacgacaaGGCCGACaAGCUGcUCGCCg -3' miRNA: 3'- -UGCgGAg------CCGGCUGcUCGACuAGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 51290 | 0.71 | 0.262901 |
Target: 5'- -gGCCgCGGCCGACGugcaggcucAGCaccucggugccgagGAUCGCCa -3' miRNA: 3'- ugCGGaGCCGGCUGC---------UCGa-------------CUAGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 28291 | 0.71 | 0.253911 |
Target: 5'- -aGCCgucgCGGCUGcgcuugcCGAGCUGcagGUCGCCg -3' miRNA: 3'- ugCGGa---GCCGGCu------GCUCGAC---UAGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 49152 | 0.71 | 0.247646 |
Target: 5'- uACGCCUgCGcGCCG-CGAGCcugcccggUGAgCGCCa -3' miRNA: 3'- -UGCGGA-GC-CGGCuGCUCG--------ACUaGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 33534 | 0.7 | 0.29426 |
Target: 5'- gGCGaCUUCGGCCGccuugcGCGAGgUGGUgGCg -3' miRNA: 3'- -UGC-GGAGCCGGC------UGCUCgACUAgCGg -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 48315 | 0.7 | 0.29426 |
Target: 5'- -gGCCgCGGCCGAcCGGGCgcgacacGAUCGUg -3' miRNA: 3'- ugCGGaGCCGGCU-GCUCGa------CUAGCGg -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 23824 | 0.7 | 0.287203 |
Target: 5'- uACGCCUgCGGgacgcCCGACc-GCUgGAUCGCCu -3' miRNA: 3'- -UGCGGA-GCC-----GGCUGcuCGA-CUAGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 4688 | 0.7 | 0.28028 |
Target: 5'- cCGCCUUGGCCGccuugGCuuGCUGcgCGCg -3' miRNA: 3'- uGCGGAGCCGGC-----UGcuCGACuaGCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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