Results 61 - 80 of 200 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
12892 | 3' | -59.7 | NC_003387.1 | + | 48686 | 0.7 | 0.271479 |
Target: 5'- uCGCCccaggaGGCCGccacGCGguucuuuugggccuGGCUGAUCGCCg -3' miRNA: 3'- uGCGGag----CCGGC----UGC--------------UCGACUAGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 45054 | 0.7 | 0.266832 |
Target: 5'- cCGCCUCGGCgGcaGCG-GC-GAUCGCg -3' miRNA: 3'- uGCGGAGCCGgC--UGCuCGaCUAGCGg -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 40513 | 0.7 | 0.27349 |
Target: 5'- gGCGCUgucaGGCCGGgcCGGGCcGGUuCGCCg -3' miRNA: 3'- -UGCGGag--CCGGCU--GCUCGaCUA-GCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 27289 | 0.7 | 0.28028 |
Target: 5'- aACGCCgcacuggCGGCCcuugaGAGCcgcgucgccgUGAUCGCCg -3' miRNA: 3'- -UGCGGa------GCCGGcug--CUCG----------ACUAGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 35581 | 0.7 | 0.28028 |
Target: 5'- gGCGCCcUGGCCGAgcugguCGAcacaGC-GAUCGCCu -3' miRNA: 3'- -UGCGGaGCCGGCU------GCU----CGaCUAGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 46769 | 0.7 | 0.29426 |
Target: 5'- aGCGaCUcgCGGuUCGGCGAGCUGAUCGa- -3' miRNA: 3'- -UGC-GGa-GCC-GGCUGCUCGACUAGCgg -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 32321 | 0.7 | 0.29426 |
Target: 5'- gAUGCCcgacaUGGaCCGcuGCG-GCUGAUCGCCg -3' miRNA: 3'- -UGCGGa----GCC-GGC--UGCuCGACUAGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 7817 | 0.7 | 0.264861 |
Target: 5'- aACGCCUggCGGCCGAgGucgcccggcgcgcaGGCgGAaUCGCCg -3' miRNA: 3'- -UGCGGA--GCCGGCUgC--------------UCGaCU-AGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 41766 | 0.7 | 0.301452 |
Target: 5'- gGCGCCgCGacGCCGGguCGGGUUGA-CGCCg -3' miRNA: 3'- -UGCGGaGC--CGGCU--GCUCGACUaGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 43734 | 0.7 | 0.301452 |
Target: 5'- uCGCCcuccUCGG-CGACuAGCUGGUgCGCCa -3' miRNA: 3'- uGCGG----AGCCgGCUGcUCGACUA-GCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 23824 | 0.7 | 0.287203 |
Target: 5'- uACGCCUgCGGgacgcCCGACc-GCUgGAUCGCCu -3' miRNA: 3'- -UGCGGA-GCC-----GGCUGcuCGA-CUAGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 37833 | 0.7 | 0.301452 |
Target: 5'- cACGCCUUgaGGUCGcCGAGCaGcUUGCCg -3' miRNA: 3'- -UGCGGAG--CCGGCuGCUCGaCuAGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 48315 | 0.7 | 0.29426 |
Target: 5'- -gGCCgCGGCCGAcCGGGCgcgacacGAUCGUg -3' miRNA: 3'- ugCGGaGCCGGCU-GCUCGa------CUAGCGg -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 33534 | 0.7 | 0.29426 |
Target: 5'- gGCGaCUUCGGCCGccuugcGCGAGgUGGUgGCg -3' miRNA: 3'- -UGC-GGAGCCGGC------UGCUCgACUAgCGg -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 18369 | 0.7 | 0.29426 |
Target: 5'- cCGCCgCGGCCGGguCGGcGCUGGUCGa- -3' miRNA: 3'- uGCGGaGCCGGCU--GCU-CGACUAGCgg -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 52090 | 0.69 | 0.316239 |
Target: 5'- uCGCCUCgucgucgagGGCCGAcagguCGGGCaGGUgCGCCa -3' miRNA: 3'- uGCGGAG---------CCGGCU-----GCUCGaCUA-GCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 52610 | 0.69 | 0.339435 |
Target: 5'- gACGCC-CGGCCGccagcucgGCG-GCUuGUCGCUc -3' miRNA: 3'- -UGCGGaGCCGGC--------UGCuCGAcUAGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 48218 | 0.69 | 0.331568 |
Target: 5'- -gGCCUCGG-UGGCGcGCUGcgCGCg -3' miRNA: 3'- ugCGGAGCCgGCUGCuCGACuaGCGg -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 25893 | 0.69 | 0.316239 |
Target: 5'- cCGCC-CaGGCCGcCGAGCaGGcCGCCa -3' miRNA: 3'- uGCGGaG-CCGGCuGCUCGaCUaGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 10375 | 0.69 | 0.308778 |
Target: 5'- cGCGUCcUGGCCuGCGcGCUGAgCGCCc -3' miRNA: 3'- -UGCGGaGCCGGcUGCuCGACUaGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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