miRNA display CGI


Results 81 - 100 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12892 3' -59.7 NC_003387.1 + 10375 0.69 0.308778
Target:  5'- cGCGUCcUGGCCuGCGcGCUGAgCGCCc -3'
miRNA:   3'- -UGCGGaGCCGGcUGCuCGACUaGCGG- -5'
12892 3' -59.7 NC_003387.1 + 6223 0.69 0.347436
Target:  5'- cCGaCCcaaUCGGCCu-CGGGCagGGUCGCCa -3'
miRNA:   3'- uGC-GG---AGCCGGcuGCUCGa-CUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 2031 0.69 0.323836
Target:  5'- cCGCCgaCGGCCGccgucgcCGAGCUGGcCGCg -3'
miRNA:   3'- uGCGGa-GCCGGCu------GCUCGACUaGCGg -5'
12892 3' -59.7 NC_003387.1 + 39242 0.69 0.334698
Target:  5'- gGCGCCgggcgaGGCCGucgaguucgaccucgGCGAGCUGGgcaaGCUg -3'
miRNA:   3'- -UGCGGag----CCGGC---------------UGCUCGACUag--CGG- -5'
12892 3' -59.7 NC_003387.1 + 29728 0.69 0.339435
Target:  5'- -gGCCgacgaCGGCagcuacgcgGGCGAGCUGGaCGCCg -3'
miRNA:   3'- ugCGGa----GCCGg--------CUGCUCGACUaGCGG- -5'
12892 3' -59.7 NC_003387.1 + 37367 0.69 0.347436
Target:  5'- gACGaCCgc-GCCGACGAGCg---CGCCa -3'
miRNA:   3'- -UGC-GGagcCGGCUGCUCGacuaGCGG- -5'
12892 3' -59.7 NC_003387.1 + 27220 0.69 0.347436
Target:  5'- gACGCgCUCGGauuucUCGAUGAGCUGcccgGCCa -3'
miRNA:   3'- -UGCG-GAGCC-----GGCUGCUCGACuag-CGG- -5'
12892 3' -59.7 NC_003387.1 + 10751 0.69 0.350674
Target:  5'- cCGCCgaggCGGCCGugGucgcagccgcgucgaGGCcGAaCGCCg -3'
miRNA:   3'- uGCGGa---GCCGGCugC---------------UCGaCUaGCGG- -5'
12892 3' -59.7 NC_003387.1 + 25893 0.69 0.316239
Target:  5'- cCGCC-CaGGCCGcCGAGCaGGcCGCCa -3'
miRNA:   3'- uGCGGaG-CCGGCuGCUCGaCUaGCGG- -5'
12892 3' -59.7 NC_003387.1 + 23379 0.69 0.347436
Target:  5'- -aGCUgauUCGggucGCCGACGAGCUGAacaUGCCc -3'
miRNA:   3'- ugCGG---AGC----CGGCUGCUCGACUa--GCGG- -5'
12892 3' -59.7 NC_003387.1 + 52610 0.69 0.339435
Target:  5'- gACGCC-CGGCCGccagcucgGCG-GCUuGUCGCUc -3'
miRNA:   3'- -UGCGGaGCCGGC--------UGCuCGAcUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 30181 0.69 0.347436
Target:  5'- uCGCCUCGGgcaaggagcagUCGcCGAGCcGGUaCGCCg -3'
miRNA:   3'- uGCGGAGCC-----------GGCuGCUCGaCUA-GCGG- -5'
12892 3' -59.7 NC_003387.1 + 45572 0.69 0.342619
Target:  5'- uCGUCggcaCGGCCGAgGAgccgggccucgcgugGCUGAUCGaCCg -3'
miRNA:   3'- uGCGGa---GCCGGCUgCU---------------CGACUAGC-GG- -5'
12892 3' -59.7 NC_003387.1 + 41143 0.69 0.345021
Target:  5'- cGCGCCgaCGGCCGcugcgagugucaggGCGAGUgcggccGGUCGCa -3'
miRNA:   3'- -UGCGGa-GCCGGC--------------UGCUCGa-----CUAGCGg -5'
12892 3' -59.7 NC_003387.1 + 22603 0.68 0.385952
Target:  5'- aGC-CCUCGGCCugggccagggucgcGGCGGGCaUGAUccauucgCGCCa -3'
miRNA:   3'- -UGcGGAGCCGG--------------CUGCUCG-ACUA-------GCGG- -5'
12892 3' -59.7 NC_003387.1 + 6430 0.68 0.38856
Target:  5'- gUGCCgaaaaugaCGGCCuGGuCGAGCUucuugccGAUCGCCu -3'
miRNA:   3'- uGCGGa-------GCCGG-CU-GCUCGA-------CUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 8475 0.68 0.354751
Target:  5'- -aGCUaCGGCgGGCGGGCUugaggccGAUCGUCc -3'
miRNA:   3'- ugCGGaGCCGgCUGCUCGA-------CUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 36739 0.68 0.37224
Target:  5'- -gGCCa-GGUCGGCGAGCcGGUgaUGCCa -3'
miRNA:   3'- ugCGGagCCGGCUGCUCGaCUA--GCGG- -5'
12892 3' -59.7 NC_003387.1 + 10076 0.68 0.380771
Target:  5'- uCGCC-CGGCCGcgggaACGGGUcgGGUgCGCCc -3'
miRNA:   3'- uGCGGaGCCGGC-----UGCUCGa-CUA-GCGG- -5'
12892 3' -59.7 NC_003387.1 + 46167 0.68 0.398221
Target:  5'- cAUGUCggCGGCCGucuUGGGCUcGUCGUCg -3'
miRNA:   3'- -UGCGGa-GCCGGCu--GCUCGAcUAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.