miRNA display CGI


Results 1 - 20 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12892 3' -59.7 NC_003387.1 + 5757 1.1 0.000306
Target:  5'- aACGCCUCGGCCGACGAGCUGAUCGCCu -3'
miRNA:   3'- -UGCGGAGCCGGCUGCUCGACUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 39832 0.86 0.021374
Target:  5'- uGCGCaC-CGGUCGGCGAGCUGGUCGUCg -3'
miRNA:   3'- -UGCG-GaGCCGGCUGCUCGACUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 18204 0.83 0.03376
Target:  5'- uGCGCCUCGGCgacgcgacgacCGGCGAcCUGGUCGCCc -3'
miRNA:   3'- -UGCGGAGCCG-----------GCUGCUcGACUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 21720 0.83 0.036768
Target:  5'- cCGCCgCGGUCGACGAGCUGA-CGCUc -3'
miRNA:   3'- uGCGGaGCCGGCUGCUCGACUaGCGG- -5'
12892 3' -59.7 NC_003387.1 + 40928 0.82 0.037828
Target:  5'- -gGCCUgaUGGaCGGCGAGCUGGUCGCCa -3'
miRNA:   3'- ugCGGA--GCCgGCUGCUCGACUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 39594 0.81 0.048815
Target:  5'- uGCGCaccagcgaGGCCGACGAGUgGAUCGCCg -3'
miRNA:   3'- -UGCGgag-----CCGGCUGCUCGaCUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 45880 0.79 0.066511
Target:  5'- cGCGCCgCGGCCGAgCGGGC-GAUCGaCCu -3'
miRNA:   3'- -UGCGGaGCCGGCU-GCUCGaCUAGC-GG- -5'
12892 3' -59.7 NC_003387.1 + 45645 0.79 0.068206
Target:  5'- gGCuCCUCGGCCgugccGACGAGCUGGcggcggaUCGCCu -3'
miRNA:   3'- -UGcGGAGCCGG-----CUGCUCGACU-------AGCGG- -5'
12892 3' -59.7 NC_003387.1 + 25860 0.78 0.07437
Target:  5'- cCGCCgagCGGCCGAgaauguCGAGCgGGUUGCCg -3'
miRNA:   3'- uGCGGa--GCCGGCU------GCUCGaCUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 47630 0.78 0.083116
Target:  5'- cACGCgagugCGGCCGACGAGCacGAccUCGCCg -3'
miRNA:   3'- -UGCGga---GCCGGCUGCUCGa-CU--AGCGG- -5'
12892 3' -59.7 NC_003387.1 + 46425 0.77 0.090311
Target:  5'- -gGCCUCGGCCG-CGGGC-GA-CGCCu -3'
miRNA:   3'- ugCGGAGCCGGCuGCUCGaCUaGCGG- -5'
12892 3' -59.7 NC_003387.1 + 51376 0.77 0.095432
Target:  5'- gGCGCCgccGCCGACGAGCUGGcagggcucggggUCGUCg -3'
miRNA:   3'- -UGCGGagcCGGCUGCUCGACU------------AGCGG- -5'
12892 3' -59.7 NC_003387.1 + 45393 0.76 0.106508
Target:  5'- uGCGCC-CGGCCGccCGAGCcGAUCGUg -3'
miRNA:   3'- -UGCGGaGCCGGCu-GCUCGaCUAGCGg -5'
12892 3' -59.7 NC_003387.1 + 34241 0.76 0.10946
Target:  5'- gGC-CCUCGGggcgcUCGACcGGCUGAUCGCCg -3'
miRNA:   3'- -UGcGGAGCC-----GGCUGcUCGACUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 457 0.76 0.112489
Target:  5'- cCGCCgcggCGGCCGacggcgaccggcGCGAGCUGcUCGUCg -3'
miRNA:   3'- uGCGGa---GCCGGC------------UGCUCGACuAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 48863 0.76 0.112489
Target:  5'- cCGCCgCGGCgaucagCGGCGAGCUGGcugCGCCg -3'
miRNA:   3'- uGCGGaGCCG------GCUGCUCGACUa--GCGG- -5'
12892 3' -59.7 NC_003387.1 + 32225 0.76 0.113723
Target:  5'- cGCGCUgcgCGaGCgCGACGAGCUGGccgaccgccuggccgUCGCCg -3'
miRNA:   3'- -UGCGGa--GC-CG-GCUGCUCGACU---------------AGCGG- -5'
12892 3' -59.7 NC_003387.1 + 8206 0.76 0.114656
Target:  5'- cUGCC-CGGCCGggacagcagcgcguACGAGCUGGgcUCGCCc -3'
miRNA:   3'- uGCGGaGCCGGC--------------UGCUCGACU--AGCGG- -5'
12892 3' -59.7 NC_003387.1 + 1979 0.76 0.118784
Target:  5'- gGCGCCagcgaGGgCGucauucagcGCGGGCUGAUCGCCa -3'
miRNA:   3'- -UGCGGag---CCgGC---------UGCUCGACUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 32159 0.75 0.128842
Target:  5'- cCGCCUgcaGGCacagauuGACGAGCUGAcCGCCg -3'
miRNA:   3'- uGCGGAg--CCGg------CUGCUCGACUaGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.