miRNA display CGI


Results 41 - 60 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12892 3' -59.7 NC_003387.1 + 18929 0.72 0.212707
Target:  5'- aGCGCCUCGGgCGACGA-CaGGUCgauGCCc -3'
miRNA:   3'- -UGCGGAGCCgGCUGCUcGaCUAG---CGG- -5'
12892 3' -59.7 NC_003387.1 + 28229 0.72 0.218221
Target:  5'- cCGCgaCGGCuCGAcCGAGCaGAUCGUCg -3'
miRNA:   3'- uGCGgaGCCG-GCU-GCUCGaCUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 16386 0.72 0.218221
Target:  5'- -gGCCa-GGCCGACGAcacGCUGAUgGCg -3'
miRNA:   3'- ugCGGagCCGGCUGCU---CGACUAgCGg -5'
12892 3' -59.7 NC_003387.1 + 49309 0.71 0.229616
Target:  5'- cACGCCgagggcaCGGCCc-CGAGCaUGAUCGCg -3'
miRNA:   3'- -UGCGGa------GCCGGcuGCUCG-ACUAGCGg -5'
12892 3' -59.7 NC_003387.1 + 27560 0.71 0.229616
Target:  5'- cCGCCUCgGGCCGcugacACGAGCcccGAUCGgCu -3'
miRNA:   3'- uGCGGAG-CCGGC-----UGCUCGa--CUAGCgG- -5'
12892 3' -59.7 NC_003387.1 + 50105 0.71 0.229616
Target:  5'- uCGCCgaGGCCcGCGAGCgccuggucacGAUCGCCg -3'
miRNA:   3'- uGCGGagCCGGcUGCUCGa---------CUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 50239 0.71 0.231954
Target:  5'- gGCGCCUaccggaucgaggaggUGGCCGACGuGCgcaccgaggUGAUCGUg -3'
miRNA:   3'- -UGCGGA---------------GCCGGCUGCuCG---------ACUAGCGg -5'
12892 3' -59.7 NC_003387.1 + 41811 0.71 0.247026
Target:  5'- cACGCCU-GGCagaucauCGACGAGCUGAgcauccuggUCgGCCa -3'
miRNA:   3'- -UGCGGAgCCG-------GCUGCUCGACU---------AG-CGG- -5'
12892 3' -59.7 NC_003387.1 + 49152 0.71 0.247646
Target:  5'- uACGCCUgCGcGCCG-CGAGCcugcccggUGAgCGCCa -3'
miRNA:   3'- -UGCGGA-GC-CGGCuGCUCG--------ACUaGCGG- -5'
12892 3' -59.7 NC_003387.1 + 4555 0.71 0.247646
Target:  5'- gGCGaCUacgacaaGGCCGACaAGCUGcUCGCCg -3'
miRNA:   3'- -UGCgGAg------CCGGCUGcUCGACuAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 9369 0.71 0.252018
Target:  5'- -aGCCgguggCGGCCGaggcgacccccgagGCGGGCaagacGAUCGCCg -3'
miRNA:   3'- ugCGGa----GCCGGC--------------UGCUCGa----CUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 28291 0.71 0.253911
Target:  5'- -aGCCgucgCGGCUGcgcuugcCGAGCUGcagGUCGCCg -3'
miRNA:   3'- ugCGGa---GCCGGCu------GCUCGAC---UAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 40621 0.71 0.253911
Target:  5'- aACGCCUCGGgggucaCGcccuCGGGCaGGUCGCUg -3'
miRNA:   3'- -UGCGGAGCCg-----GCu---GCUCGaCUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 5332 0.71 0.260306
Target:  5'- aACGCCuaaUCGGCCGGUGAuGCUGAcgaGCUa -3'
miRNA:   3'- -UGCGG---AGCCGGCUGCU-CGACUag-CGG- -5'
12892 3' -59.7 NC_003387.1 + 21689 0.71 0.260306
Target:  5'- gACGCCcUGGCCGccucgGCGAGCgcgGcccgCGCCg -3'
miRNA:   3'- -UGCGGaGCCGGC-----UGCUCGa--Cua--GCGG- -5'
12892 3' -59.7 NC_003387.1 + 51290 0.71 0.262901
Target:  5'- -gGCCgCGGCCGACGugcaggcucAGCaccucggugccgagGAUCGCCa -3'
miRNA:   3'- ugCGGaGCCGGCUGC---------UCGa-------------CUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 7817 0.7 0.264861
Target:  5'- aACGCCUggCGGCCGAgGucgcccggcgcgcaGGCgGAaUCGCCg -3'
miRNA:   3'- -UGCGGA--GCCGGCUgC--------------UCGaCU-AGCGG- -5'
12892 3' -59.7 NC_003387.1 + 45054 0.7 0.266832
Target:  5'- cCGCCUCGGCgGcaGCG-GC-GAUCGCg -3'
miRNA:   3'- uGCGGAGCCGgC--UGCuCGaCUAGCGg -5'
12892 3' -59.7 NC_003387.1 + 11473 0.7 0.266832
Target:  5'- -gGCCgaucgCGGCCaGCGuGGCgccGAUCGCCg -3'
miRNA:   3'- ugCGGa----GCCGGcUGC-UCGa--CUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 15637 0.7 0.266832
Target:  5'- gGCGCgaaUCGGCugcaccucCGGCGGGCUGAaaggcguugCGCCg -3'
miRNA:   3'- -UGCGg--AGCCG--------GCUGCUCGACUa--------GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.