miRNA display CGI


Results 61 - 80 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12892 3' -59.7 NC_003387.1 + 15637 0.7 0.266832
Target:  5'- gGCGCgaaUCGGCugcaccucCGGCGGGCUGAaaggcguugCGCCg -3'
miRNA:   3'- -UGCGg--AGCCG--------GCUGCUCGACUa--------GCGG- -5'
12892 3' -59.7 NC_003387.1 + 48686 0.7 0.271479
Target:  5'- uCGCCccaggaGGCCGccacGCGguucuuuugggccuGGCUGAUCGCCg -3'
miRNA:   3'- uGCGGag----CCGGC----UGC--------------UCGACUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 40513 0.7 0.27349
Target:  5'- gGCGCUgucaGGCCGGgcCGGGCcGGUuCGCCg -3'
miRNA:   3'- -UGCGGag--CCGGCU--GCUCGaCUA-GCGG- -5'
12892 3' -59.7 NC_003387.1 + 27289 0.7 0.28028
Target:  5'- aACGCCgcacuggCGGCCcuugaGAGCcgcgucgccgUGAUCGCCg -3'
miRNA:   3'- -UGCGGa------GCCGGcug--CUCG----------ACUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 35581 0.7 0.28028
Target:  5'- gGCGCCcUGGCCGAgcugguCGAcacaGC-GAUCGCCu -3'
miRNA:   3'- -UGCGGaGCCGGCU------GCU----CGaCUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 4688 0.7 0.28028
Target:  5'- cCGCCUUGGCCGccuugGCuuGCUGcgCGCg -3'
miRNA:   3'- uGCGGAGCCGGC-----UGcuCGACuaGCGg -5'
12892 3' -59.7 NC_003387.1 + 23824 0.7 0.287203
Target:  5'- uACGCCUgCGGgacgcCCGACc-GCUgGAUCGCCu -3'
miRNA:   3'- -UGCGGA-GCC-----GGCUGcuCGA-CUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 18369 0.7 0.29426
Target:  5'- cCGCCgCGGCCGGguCGGcGCUGGUCGa- -3'
miRNA:   3'- uGCGGaGCCGGCU--GCU-CGACUAGCgg -5'
12892 3' -59.7 NC_003387.1 + 46769 0.7 0.29426
Target:  5'- aGCGaCUcgCGGuUCGGCGAGCUGAUCGa- -3'
miRNA:   3'- -UGC-GGa-GCC-GGCUGCUCGACUAGCgg -5'
12892 3' -59.7 NC_003387.1 + 33534 0.7 0.29426
Target:  5'- gGCGaCUUCGGCCGccuugcGCGAGgUGGUgGCg -3'
miRNA:   3'- -UGC-GGAGCCGGC------UGCUCgACUAgCGg -5'
12892 3' -59.7 NC_003387.1 + 48315 0.7 0.29426
Target:  5'- -gGCCgCGGCCGAcCGGGCgcgacacGAUCGUg -3'
miRNA:   3'- ugCGGaGCCGGCU-GCUCGa------CUAGCGg -5'
12892 3' -59.7 NC_003387.1 + 32321 0.7 0.29426
Target:  5'- gAUGCCcgacaUGGaCCGcuGCG-GCUGAUCGCCg -3'
miRNA:   3'- -UGCGGa----GCC-GGC--UGCuCGACUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 41766 0.7 0.301452
Target:  5'- gGCGCCgCGacGCCGGguCGGGUUGA-CGCCg -3'
miRNA:   3'- -UGCGGaGC--CGGCU--GCUCGACUaGCGG- -5'
12892 3' -59.7 NC_003387.1 + 43734 0.7 0.301452
Target:  5'- uCGCCcuccUCGG-CGACuAGCUGGUgCGCCa -3'
miRNA:   3'- uGCGG----AGCCgGCUGcUCGACUA-GCGG- -5'
12892 3' -59.7 NC_003387.1 + 37833 0.7 0.301452
Target:  5'- cACGCCUUgaGGUCGcCGAGCaGcUUGCCg -3'
miRNA:   3'- -UGCGGAG--CCGGCuGCUCGaCuAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 10375 0.69 0.308778
Target:  5'- cGCGUCcUGGCCuGCGcGCUGAgCGCCc -3'
miRNA:   3'- -UGCGGaGCCGGcUGCuCGACUaGCGG- -5'
12892 3' -59.7 NC_003387.1 + 47948 0.69 0.308778
Target:  5'- gACGCCgugugGGCCGcgaagcaccGCGAGCUGggCGgCa -3'
miRNA:   3'- -UGCGGag---CCGGC---------UGCUCGACuaGCgG- -5'
12892 3' -59.7 NC_003387.1 + 25893 0.69 0.316239
Target:  5'- cCGCC-CaGGCCGcCGAGCaGGcCGCCa -3'
miRNA:   3'- uGCGGaG-CCGGCuGCUCGaCUaGCGG- -5'
12892 3' -59.7 NC_003387.1 + 52090 0.69 0.316239
Target:  5'- uCGCCUCgucgucgagGGCCGAcagguCGGGCaGGUgCGCCa -3'
miRNA:   3'- uGCGGAG---------CCGGCU-----GCUCGaCUA-GCGG- -5'
12892 3' -59.7 NC_003387.1 + 4661 0.69 0.319262
Target:  5'- gGCGCCaagCGGCCGAcgccgccaagcaagaCGAgguGCUGAaccUCGUCg -3'
miRNA:   3'- -UGCGGa--GCCGGCU---------------GCU---CGACU---AGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.