Results 81 - 100 of 200 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12892 | 3' | -59.7 | NC_003387.1 | + | 2031 | 0.69 | 0.323836 |
Target: 5'- cCGCCgaCGGCCGccgucgcCGAGCUGGcCGCg -3' miRNA: 3'- uGCGGa-GCCGGCu------GCUCGACUaGCGg -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 48218 | 0.69 | 0.331568 |
Target: 5'- -gGCCUCGG-UGGCGcGCUGcgCGCg -3' miRNA: 3'- ugCGGAGCCgGCUGCuCGACuaGCGg -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 39242 | 0.69 | 0.334698 |
Target: 5'- gGCGCCgggcgaGGCCGucgaguucgaccucgGCGAGCUGGgcaaGCUg -3' miRNA: 3'- -UGCGGag----CCGGC---------------UGCUCGACUag--CGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 9441 | 0.69 | 0.339435 |
Target: 5'- uCGCCUCGGCCGccACcGGCUcGUCGaCg -3' miRNA: 3'- uGCGGAGCCGGC--UGcUCGAcUAGCgG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 29728 | 0.69 | 0.339435 |
Target: 5'- -gGCCgacgaCGGCagcuacgcgGGCGAGCUGGaCGCCg -3' miRNA: 3'- ugCGGa----GCCGg--------CUGCUCGACUaGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 52610 | 0.69 | 0.339435 |
Target: 5'- gACGCC-CGGCCGccagcucgGCG-GCUuGUCGCUc -3' miRNA: 3'- -UGCGGaGCCGGC--------UGCuCGAcUAGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 45572 | 0.69 | 0.342619 |
Target: 5'- uCGUCggcaCGGCCGAgGAgccgggccucgcgugGCUGAUCGaCCg -3' miRNA: 3'- uGCGGa---GCCGGCUgCU---------------CGACUAGC-GG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 41143 | 0.69 | 0.345021 |
Target: 5'- cGCGCCgaCGGCCGcugcgagugucaggGCGAGUgcggccGGUCGCa -3' miRNA: 3'- -UGCGGa-GCCGGC--------------UGCUCGa-----CUAGCGg -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 37367 | 0.69 | 0.347436 |
Target: 5'- gACGaCCgc-GCCGACGAGCg---CGCCa -3' miRNA: 3'- -UGC-GGagcCGGCUGCUCGacuaGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 6223 | 0.69 | 0.347436 |
Target: 5'- cCGaCCcaaUCGGCCu-CGGGCagGGUCGCCa -3' miRNA: 3'- uGC-GG---AGCCGGcuGCUCGa-CUAGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 27220 | 0.69 | 0.347436 |
Target: 5'- gACGCgCUCGGauuucUCGAUGAGCUGcccgGCCa -3' miRNA: 3'- -UGCG-GAGCC-----GGCUGCUCGACuag-CGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 23379 | 0.69 | 0.347436 |
Target: 5'- -aGCUgauUCGggucGCCGACGAGCUGAacaUGCCc -3' miRNA: 3'- ugCGG---AGC----CGGCUGCUCGACUa--GCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 30181 | 0.69 | 0.347436 |
Target: 5'- uCGCCUCGGgcaaggagcagUCGcCGAGCcGGUaCGCCg -3' miRNA: 3'- uGCGGAGCC-----------GGCuGCUCGaCUA-GCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 10751 | 0.69 | 0.350674 |
Target: 5'- cCGCCgaggCGGCCGugGucgcagccgcgucgaGGCcGAaCGCCg -3' miRNA: 3'- uGCGGa---GCCGGCugC---------------UCGaCUaGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 8475 | 0.68 | 0.354751 |
Target: 5'- -aGCUaCGGCgGGCGGGCUugaggccGAUCGUCc -3' miRNA: 3'- ugCGGaGCCGgCUGCUCGA-------CUAGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 2126 | 0.68 | 0.355571 |
Target: 5'- gACGCCccagCGGCCGACGuGgaGuUCcCCg -3' miRNA: 3'- -UGCGGa---GCCGGCUGCuCgaCuAGcGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 44407 | 0.68 | 0.360516 |
Target: 5'- uCGCCgCGGCUGACGcugugcucgcgauGCUGccCGCCg -3' miRNA: 3'- uGCGGaGCCGGCUGCu------------CGACuaGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 33478 | 0.68 | 0.37224 |
Target: 5'- uCGCCgaggCGGUCGGCGcccGC-GAUCGCg -3' miRNA: 3'- uGCGGa---GCCGGCUGCu--CGaCUAGCGg -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 26120 | 0.68 | 0.37224 |
Target: 5'- uGCGCCa-GGUCGGCGcGUccGUCGCCg -3' miRNA: 3'- -UGCGGagCCGGCUGCuCGacUAGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 36739 | 0.68 | 0.37224 |
Target: 5'- -gGCCa-GGUCGGCGAGCcGGUgaUGCCa -3' miRNA: 3'- ugCGGagCCGGCUGCUCGaCUA--GCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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