miRNA display CGI


Results 21 - 40 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12892 3' -59.7 NC_003387.1 + 44020 0.66 0.482694
Target:  5'- uCGCCgugcggCGGCgGGCGAcCUGAUUcCCg -3'
miRNA:   3'- uGCGGa-----GCCGgCUGCUcGACUAGcGG- -5'
12892 3' -59.7 NC_003387.1 + 45290 0.66 0.482694
Target:  5'- cACGCCacgaUCGGCCG-CGGGUcGAacggGCCg -3'
miRNA:   3'- -UGCGG----AGCCGGCuGCUCGaCUag--CGG- -5'
12892 3' -59.7 NC_003387.1 + 45717 0.66 0.482694
Target:  5'- gGCGCCaggCGGCCGAUcuucGCc--UCGCCg -3'
miRNA:   3'- -UGCGGa--GCCGGCUGcu--CGacuAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 19230 0.66 0.482694
Target:  5'- cGCGcCCUCGacagcGUCGACGAGCcac-CGCCc -3'
miRNA:   3'- -UGC-GGAGC-----CGGCUGCUCGacuaGCGG- -5'
12892 3' -59.7 NC_003387.1 + 25482 0.66 0.479736
Target:  5'- gGCGCauccugUCGGgCGACcugcagcgguucaaGuccaAGCUGAUCGCCg -3'
miRNA:   3'- -UGCGg-----AGCCgGCUG--------------C----UCGACUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 47233 0.66 0.472868
Target:  5'- -gGCCUCGGCCaGGugcCGGGCgacuugaacGAUCuGCCc -3'
miRNA:   3'- ugCGGAGCCGG-CU---GCUCGa--------CUAG-CGG- -5'
12892 3' -59.7 NC_003387.1 + 13234 0.66 0.472868
Target:  5'- gACGCCgagcaGGCCGAC-AGC-GAUCuGCg -3'
miRNA:   3'- -UGCGGag---CCGGCUGcUCGaCUAG-CGg -5'
12892 3' -59.7 NC_003387.1 + 14167 0.66 0.472868
Target:  5'- uCGCCg-GGCCGggccGCGGGCgUGAgggCGUCg -3'
miRNA:   3'- uGCGGagCCGGC----UGCUCG-ACUa--GCGG- -5'
12892 3' -59.7 NC_003387.1 + 36733 0.66 0.472868
Target:  5'- -gGCCUCGacGCCGucuGCGAGCgccUGggCGUCa -3'
miRNA:   3'- ugCGGAGC--CGGC---UGCUCG---ACuaGCGG- -5'
12892 3' -59.7 NC_003387.1 + 28381 0.66 0.472868
Target:  5'- gGCGCaacucgUGGCUGACGcaGGaaacGAUCGCCg -3'
miRNA:   3'- -UGCGga----GCCGGCUGC--UCga--CUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 21016 0.66 0.472868
Target:  5'- aGCGCCg-GGCUGuCaacauGGCUGAccgUCGCCa -3'
miRNA:   3'- -UGCGGagCCGGCuGc----UCGACU---AGCGG- -5'
12892 3' -59.7 NC_003387.1 + 19569 0.66 0.472868
Target:  5'- uCGagUCGGCUGGCGAGcCUGcUCGgCg -3'
miRNA:   3'- uGCggAGCCGGCUGCUC-GACuAGCgG- -5'
12892 3' -59.7 NC_003387.1 + 34614 0.66 0.472868
Target:  5'- gACGUCgucgagCgGGUCGACGGGCagcccgagGAUCGCg -3'
miRNA:   3'- -UGCGGa-----G-CCGGCUGCUCGa-------CUAGCGg -5'
12892 3' -59.7 NC_003387.1 + 50392 0.66 0.472868
Target:  5'- -gGCCUCGacaccGCCGAgcuguacguCGGGCggcaGAUCGUCg -3'
miRNA:   3'- ugCGGAGC-----CGGCU---------GCUCGa---CUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 13775 0.66 0.472868
Target:  5'- cCGCCUgGGCCGcgcuCGGGaC-GAaCGCCg -3'
miRNA:   3'- uGCGGAgCCGGCu---GCUC-GaCUaGCGG- -5'
12892 3' -59.7 NC_003387.1 + 13732 0.66 0.472868
Target:  5'- gGCGcCCUCGG-CGAcCGAGCcgc-CGCCg -3'
miRNA:   3'- -UGC-GGAGCCgGCU-GCUCGacuaGCGG- -5'
12892 3' -59.7 NC_003387.1 + 237 0.66 0.469939
Target:  5'- uUGCCgUCGGCCagcaggcccagcucGGCGGcGCgGAUCGCg -3'
miRNA:   3'- uGCGG-AGCCGG--------------CUGCU-CGaCUAGCGg -5'
12892 3' -59.7 NC_003387.1 + 2495 0.66 0.469939
Target:  5'- gGCGCCUCGuaugugacggugacGCCGACugaugagGGGCcgguguuccgcacgcGGUCGCCg -3'
miRNA:   3'- -UGCGGAGC--------------CGGCUG-------CUCGa--------------CUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 30563 0.66 0.469939
Target:  5'- cCGCCgCGGCCGguacgcgccgugccGCGAGUgcgGGUaCGUCg -3'
miRNA:   3'- uGCGGaGCCGGC--------------UGCUCGa--CUA-GCGG- -5'
12892 3' -59.7 NC_003387.1 + 17842 0.66 0.463143
Target:  5'- uCGUUUCGGCCGACgccgugauGAGCgguGUgGCCc -3'
miRNA:   3'- uGCGGAGCCGGCUG--------CUCGac-UAgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.