miRNA display CGI


Results 61 - 80 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12892 3' -59.7 NC_003387.1 + 2899 0.67 0.444014
Target:  5'- gGCGaucaaCUCGGUgaacuuCGACcGGCUGAUCGUg -3'
miRNA:   3'- -UGCg----GAGCCG------GCUGcUCGACUAGCGg -5'
12892 3' -59.7 NC_003387.1 + 44475 0.67 0.434617
Target:  5'- -aGCgUCaGCCGcgGCGAGCU--UCGCCu -3'
miRNA:   3'- ugCGgAGcCGGC--UGCUCGAcuAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 24885 0.67 0.434617
Target:  5'- -gGCCUUGaCCGGCG-GCgUGggCGCCu -3'
miRNA:   3'- ugCGGAGCcGGCUGCuCG-ACuaGCGG- -5'
12892 3' -59.7 NC_003387.1 + 35351 0.67 0.434617
Target:  5'- gACGCCgagacaGGCuCGcCGcacCUGAUCGCCg -3'
miRNA:   3'- -UGCGGag----CCG-GCuGCuc-GACUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 35719 0.67 0.434617
Target:  5'- -gGCCUgCcGCUGAcCGAGCUGGacgaaaUCGCCc -3'
miRNA:   3'- ugCGGA-GcCGGCU-GCUCGACU------AGCGG- -5'
12892 3' -59.7 NC_003387.1 + 49889 0.67 0.434617
Target:  5'- aAUGCCggCGagaGCCGAuuugugcgcUGAGCUGcgcGUCGCCg -3'
miRNA:   3'- -UGCGGa-GC---CGGCU---------GCUCGAC---UAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 33071 0.67 0.434617
Target:  5'- cGCGCCaaGcGCCG-CGAGCguaaccgcGUCGCCc -3'
miRNA:   3'- -UGCGGagC-CGGCuGCUCGac------UAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 24623 0.67 0.425337
Target:  5'- cGCGCCUgGGCgaccCGACGcaccucgcccuGCUGcgcgagGUCGCCa -3'
miRNA:   3'- -UGCGGAgCCG----GCUGCu----------CGAC------UAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 24578 0.67 0.425337
Target:  5'- -gGCUgCGGCUGACGAaccGCcGGUCgGCCa -3'
miRNA:   3'- ugCGGaGCCGGCUGCU---CGaCUAG-CGG- -5'
12892 3' -59.7 NC_003387.1 + 4452 0.67 0.416176
Target:  5'- cGCGCCgaaGGCCGAgcCGAccGCcGAgccCGCCg -3'
miRNA:   3'- -UGCGGag-CCGGCU--GCU--CGaCUa--GCGG- -5'
12892 3' -59.7 NC_003387.1 + 42548 0.67 0.416176
Target:  5'- gACGCCga-GCUGGCGAGCgaGAUUGgCg -3'
miRNA:   3'- -UGCGGagcCGGCUGCUCGa-CUAGCgG- -5'
12892 3' -59.7 NC_003387.1 + 32328 0.67 0.416176
Target:  5'- -gGCCUCGG-CGACGgccaGGC-GGUCgGCCa -3'
miRNA:   3'- ugCGGAGCCgGCUGC----UCGaCUAG-CGG- -5'
12892 3' -59.7 NC_003387.1 + 1616 0.67 0.415266
Target:  5'- gGCGaUUUCGGUCGGCGcgugcuGGCUGAUggacgacgacggcCGCCa -3'
miRNA:   3'- -UGC-GGAGCCGGCUGC------UCGACUA-------------GCGG- -5'
12892 3' -59.7 NC_003387.1 + 11692 0.67 0.407136
Target:  5'- uCGCCgCGGUCGuCGGGCUcgcuGUCGCg -3'
miRNA:   3'- uGCGGaGCCGGCuGCUCGAc---UAGCGg -5'
12892 3' -59.7 NC_003387.1 + 35633 0.67 0.407136
Target:  5'- cCGCCgaggCGGCCgGGCGGGCac-UgGCCg -3'
miRNA:   3'- uGCGGa---GCCGG-CUGCUCGacuAgCGG- -5'
12892 3' -59.7 NC_003387.1 + 24490 0.67 0.407136
Target:  5'- cGCGUCcUGGCCGACcGGCgguUCGUCa -3'
miRNA:   3'- -UGCGGaGCCGGCUGcUCGacuAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 44610 0.67 0.407136
Target:  5'- gACGCCgUCgGGCCGuggcGCGAGCguGUgGCCc -3'
miRNA:   3'- -UGCGG-AG-CCGGC----UGCUCGacUAgCGG- -5'
12892 3' -59.7 NC_003387.1 + 40338 0.68 0.401772
Target:  5'- cGCGCagaUCGGUcugcacggucaCGACGAGCUGcaugcgggggcugccGUCGUCc -3'
miRNA:   3'- -UGCGg--AGCCG-----------GCUGCUCGAC---------------UAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 5875 0.68 0.398221
Target:  5'- uGCGCUUCGGUgGuGCGGGCggcuuguucUGGUcaCGCCa -3'
miRNA:   3'- -UGCGGAGCCGgC-UGCUCG---------ACUA--GCGG- -5'
12892 3' -59.7 NC_003387.1 + 37226 0.68 0.398221
Target:  5'- aACGCCgccgUGGgcgacgauuUCGACGAGCUGAaCGUg -3'
miRNA:   3'- -UGCGGa---GCC---------GGCUGCUCGACUaGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.