Results 81 - 100 of 200 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
12892 | 3' | -59.7 | NC_003387.1 | + | 46167 | 0.68 | 0.398221 |
Target: 5'- cAUGUCggCGGCCGucuUGGGCUcGUCGUCg -3' miRNA: 3'- -UGCGGa-GCCGGCu--GCUCGAcUAGCGG- -5' |
|||||||
12892 | 3' | -59.7 | NC_003387.1 | + | 39384 | 0.68 | 0.398221 |
Target: 5'- cACGCCcucgccguugUCGGCCGG-GGGCUugccGUCGUCg -3' miRNA: 3'- -UGCGG----------AGCCGGCUgCUCGAc---UAGCGG- -5' |
|||||||
12892 | 3' | -59.7 | NC_003387.1 | + | 22185 | 0.68 | 0.398221 |
Target: 5'- cCGCCagGGCCGcCGGGgaUGG-CGCCg -3' miRNA: 3'- uGCGGagCCGGCuGCUCg-ACUaGCGG- -5' |
|||||||
12892 | 3' | -59.7 | NC_003387.1 | + | 36854 | 0.68 | 0.398221 |
Target: 5'- uGCGCgUCGGCCagcgcCGAGUgccGUCGCUg -3' miRNA: 3'- -UGCGgAGCCGGcu---GCUCGac-UAGCGG- -5' |
|||||||
12892 | 3' | -59.7 | NC_003387.1 | + | 10458 | 0.68 | 0.397337 |
Target: 5'- cGCGCUgUCGGUCGcCGguggcauGGC-GAUCGCCa -3' miRNA: 3'- -UGCGG-AGCCGGCuGC-------UCGaCUAGCGG- -5' |
|||||||
12892 | 3' | -59.7 | NC_003387.1 | + | 48763 | 0.68 | 0.39469 |
Target: 5'- cACGCacgCGGUgcuCGGCGcagccagcucgccGCUGAUCGCCg -3' miRNA: 3'- -UGCGga-GCCG---GCUGCu------------CGACUAGCGG- -5' |
|||||||
12892 | 3' | -59.7 | NC_003387.1 | + | 10688 | 0.68 | 0.389432 |
Target: 5'- cCGCCUCGGCgGugGccGCcGGUaucaaGCCg -3' miRNA: 3'- uGCGGAGCCGgCugCu-CGaCUAg----CGG- -5' |
|||||||
12892 | 3' | -59.7 | NC_003387.1 | + | 1294 | 0.68 | 0.389432 |
Target: 5'- uGCGCCUCGacGCCcuGGCGGGC-GA-CGUCg -3' miRNA: 3'- -UGCGGAGC--CGG--CUGCUCGaCUaGCGG- -5' |
|||||||
12892 | 3' | -59.7 | NC_003387.1 | + | 13644 | 0.68 | 0.389432 |
Target: 5'- -gGCCaccgUCGG-CGGCG-GCUcGGUCGCCg -3' miRNA: 3'- ugCGG----AGCCgGCUGCuCGA-CUAGCGG- -5' |
|||||||
12892 | 3' | -59.7 | NC_003387.1 | + | 42016 | 0.68 | 0.389432 |
Target: 5'- cCGCCU-GGCCG-UGA--UGGUCGCCg -3' miRNA: 3'- uGCGGAgCCGGCuGCUcgACUAGCGG- -5' |
|||||||
12892 | 3' | -59.7 | NC_003387.1 | + | 19344 | 0.68 | 0.389432 |
Target: 5'- gGCGagaaCCU-GGCCgGGCGGGCUcuGGUUGCCa -3' miRNA: 3'- -UGC----GGAgCCGG-CUGCUCGA--CUAGCGG- -5' |
|||||||
12892 | 3' | -59.7 | NC_003387.1 | + | 43913 | 0.68 | 0.389432 |
Target: 5'- -gGCCaaguUCGGgCG-CGAGCUGAgcgggaaucaggUCGCCc -3' miRNA: 3'- ugCGG----AGCCgGCuGCUCGACU------------AGCGG- -5' |
|||||||
12892 | 3' | -59.7 | NC_003387.1 | + | 6430 | 0.68 | 0.38856 |
Target: 5'- gUGCCgaaaaugaCGGCCuGGuCGAGCUucuugccGAUCGCCu -3' miRNA: 3'- uGCGGa-------GCCGG-CU-GCUCGA-------CUAGCGG- -5' |
|||||||
12892 | 3' | -59.7 | NC_003387.1 | + | 22603 | 0.68 | 0.385952 |
Target: 5'- aGC-CCUCGGCCugggccagggucgcGGCGGGCaUGAUccauucgCGCCa -3' miRNA: 3'- -UGcGGAGCCGG--------------CUGCUCG-ACUA-------GCGG- -5' |
|||||||
12892 | 3' | -59.7 | NC_003387.1 | + | 38046 | 0.68 | 0.380771 |
Target: 5'- gGCGCCccgaUCGGgCGGUG-GCUGAgcgagCGCCg -3' miRNA: 3'- -UGCGG----AGCCgGCUGCuCGACUa----GCGG- -5' |
|||||||
12892 | 3' | -59.7 | NC_003387.1 | + | 10076 | 0.68 | 0.380771 |
Target: 5'- uCGCC-CGGCCGcgggaACGGGUcgGGUgCGCCc -3' miRNA: 3'- uGCGGaGCCGGC-----UGCUCGa-CUA-GCGG- -5' |
|||||||
12892 | 3' | -59.7 | NC_003387.1 | + | 43667 | 0.68 | 0.379912 |
Target: 5'- uCGCCgaggaGGgCGACGcgauccuGGCgugGAUCGCCg -3' miRNA: 3'- uGCGGag---CCgGCUGC-------UCGa--CUAGCGG- -5' |
|||||||
12892 | 3' | -59.7 | NC_003387.1 | + | 2826 | 0.68 | 0.378198 |
Target: 5'- uGCGUUUCGucaacggccgcgacGCCGACGAcaUGAUCGUCg -3' miRNA: 3'- -UGCGGAGC--------------CGGCUGCUcgACUAGCGG- -5' |
|||||||
12892 | 3' | -59.7 | NC_003387.1 | + | 36211 | 0.68 | 0.37224 |
Target: 5'- gGCGCCUCGGCguaauCGAGgUcGUCGCa -3' miRNA: 3'- -UGCGGAGCCGgcu--GCUCgAcUAGCGg -5' |
|||||||
12892 | 3' | -59.7 | NC_003387.1 | + | 3611 | 0.68 | 0.37224 |
Target: 5'- gGCGUCcUGGCCGagcugaGCGGGCgugcggGuAUCGCCg -3' miRNA: 3'- -UGCGGaGCCGGC------UGCUCGa-----C-UAGCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home