miRNA display CGI


Results 1 - 20 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12892 3' -59.7 NC_003387.1 + 237 0.66 0.469939
Target:  5'- uUGCCgUCGGCCagcaggcccagcucGGCGGcGCgGAUCGCg -3'
miRNA:   3'- uGCGG-AGCCGG--------------CUGCU-CGaCUAGCGg -5'
12892 3' -59.7 NC_003387.1 + 457 0.76 0.112489
Target:  5'- cCGCCgcggCGGCCGacggcgaccggcGCGAGCUGcUCGUCg -3'
miRNA:   3'- uGCGGa---GCCGGC------------UGCUCGACuAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 706 0.67 0.444014
Target:  5'- cUGCCgCGG-CGGCGAcGCUGcccUCGCCc -3'
miRNA:   3'- uGCGGaGCCgGCUGCU-CGACu--AGCGG- -5'
12892 3' -59.7 NC_003387.1 + 1114 0.67 0.444014
Target:  5'- aGCGCgggUUCGGCCGugG-GU---UCGCCg -3'
miRNA:   3'- -UGCG---GAGCCGGCugCuCGacuAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 1294 0.68 0.389432
Target:  5'- uGCGCCUCGacGCCcuGGCGGGC-GA-CGUCg -3'
miRNA:   3'- -UGCGGAGC--CGG--CUGCUCGaCUaGCGG- -5'
12892 3' -59.7 NC_003387.1 + 1616 0.67 0.415266
Target:  5'- gGCGaUUUCGGUCGGCGcgugcuGGCUGAUggacgacgacggcCGCCa -3'
miRNA:   3'- -UGC-GGAGCCGGCUGC------UCGACUA-------------GCGG- -5'
12892 3' -59.7 NC_003387.1 + 1761 0.66 0.482694
Target:  5'- -aGCC-CGG-CGGCGGcGCUGG-CGCCc -3'
miRNA:   3'- ugCGGaGCCgGCUGCU-CGACUaGCGG- -5'
12892 3' -59.7 NC_003387.1 + 1979 0.76 0.118784
Target:  5'- gGCGCCagcgaGGgCGucauucagcGCGGGCUGAUCGCCa -3'
miRNA:   3'- -UGCGGag---CCgGC---------UGCUCGACUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 2031 0.69 0.323836
Target:  5'- cCGCCgaCGGCCGccgucgcCGAGCUGGcCGCg -3'
miRNA:   3'- uGCGGa-GCCGGCu------GCUCGACUaGCGg -5'
12892 3' -59.7 NC_003387.1 + 2126 0.68 0.355571
Target:  5'- gACGCCccagCGGCCGACGuGgaGuUCcCCg -3'
miRNA:   3'- -UGCGGa---GCCGGCUGCuCgaCuAGcGG- -5'
12892 3' -59.7 NC_003387.1 + 2495 0.66 0.469939
Target:  5'- gGCGCCUCGuaugugacggugacGCCGACugaugagGGGCcgguguuccgcacgcGGUCGCCg -3'
miRNA:   3'- -UGCGGAGC--------------CGGCUG-------CUCGa--------------CUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 2826 0.68 0.378198
Target:  5'- uGCGUUUCGucaacggccgcgacGCCGACGAcaUGAUCGUCg -3'
miRNA:   3'- -UGCGGAGC--------------CGGCUGCUcgACUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 2899 0.67 0.444014
Target:  5'- gGCGaucaaCUCGGUgaacuuCGACcGGCUGAUCGUg -3'
miRNA:   3'- -UGCg----GAGCCG------GCUGcUCGACUAGCGg -5'
12892 3' -59.7 NC_003387.1 + 3001 0.72 0.200478
Target:  5'- gGCGCCgaaccgcgacacgaUCaGCCGGucgaaguucacCGAGUUGAUCGCCu -3'
miRNA:   3'- -UGCGG--------------AGcCGGCU-----------GCUCGACUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 3466 0.66 0.502636
Target:  5'- uCGCUgcgCGG-CGGCGAGgUGAaaUCGCUu -3'
miRNA:   3'- uGCGGa--GCCgGCUGCUCgACU--AGCGG- -5'
12892 3' -59.7 NC_003387.1 + 3611 0.68 0.37224
Target:  5'- gGCGUCcUGGCCGagcugaGCGGGCgugcggGuAUCGCCg -3'
miRNA:   3'- -UGCGGaGCCGGC------UGCUCGa-----C-UAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 4060 0.74 0.15962
Target:  5'- uACGCCUCGGUcaCGGCGuGCgGGUucUGCCg -3'
miRNA:   3'- -UGCGGAGCCG--GCUGCuCGaCUA--GCGG- -5'
12892 3' -59.7 NC_003387.1 + 4393 0.65 0.5097
Target:  5'- aACGCCgUCGacuacuggcagaacGUCGAcgcCGAGCUGGgcaaggcguUCGCCg -3'
miRNA:   3'- -UGCGG-AGC--------------CGGCU---GCUCGACU---------AGCGG- -5'
12892 3' -59.7 NC_003387.1 + 4452 0.67 0.416176
Target:  5'- cGCGCCgaaGGCCGAgcCGAccGCcGAgccCGCCg -3'
miRNA:   3'- -UGCGGag-CCGGCU--GCU--CGaCUa--GCGG- -5'
12892 3' -59.7 NC_003387.1 + 4555 0.71 0.247646
Target:  5'- gGCGaCUacgacaaGGCCGACaAGCUGcUCGCCg -3'
miRNA:   3'- -UGCgGAg------CCGGCUGcUCGACuAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.