miRNA display CGI


Results 21 - 40 of 200 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12892 3' -59.7 NC_003387.1 + 4661 0.69 0.319262
Target:  5'- gGCGCCaagCGGCCGAcgccgccaagcaagaCGAgguGCUGAaccUCGUCg -3'
miRNA:   3'- -UGCGGa--GCCGGCU---------------GCU---CGACU---AGCGG- -5'
12892 3' -59.7 NC_003387.1 + 4688 0.7 0.28028
Target:  5'- cCGCCUUGGCCGccuugGCuuGCUGcgCGCg -3'
miRNA:   3'- uGCGGAGCCGGC-----UGcuCGACuaGCGg -5'
12892 3' -59.7 NC_003387.1 + 5211 0.72 0.201516
Target:  5'- gGCGCCUCGGguaCCGcACGAugcugcucgacauGCUGAacaacUCGCCc -3'
miRNA:   3'- -UGCGGAGCC---GGC-UGCU-------------CGACU-----AGCGG- -5'
12892 3' -59.7 NC_003387.1 + 5332 0.71 0.260306
Target:  5'- aACGCCuaaUCGGCCGGUGAuGCUGAcgaGCUa -3'
miRNA:   3'- -UGCGG---AGCCGGCUGCU-CGACUag-CGG- -5'
12892 3' -59.7 NC_003387.1 + 5505 0.66 0.463143
Target:  5'- gGCGcCCUCGGUcgaguuguccuCGGCGGGCU---UGCCu -3'
miRNA:   3'- -UGC-GGAGCCG-----------GCUGCUCGAcuaGCGG- -5'
12892 3' -59.7 NC_003387.1 + 5757 1.1 0.000306
Target:  5'- aACGCCUCGGCCGACGAGCUGAUCGCCu -3'
miRNA:   3'- -UGCGGAGCCGGCUGCUCGACUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 5875 0.68 0.398221
Target:  5'- uGCGCUUCGGUgGuGCGGGCggcuuguucUGGUcaCGCCa -3'
miRNA:   3'- -UGCGGAGCCGgC-UGCUCG---------ACUA--GCGG- -5'
12892 3' -59.7 NC_003387.1 + 6223 0.69 0.347436
Target:  5'- cCGaCCcaaUCGGCCu-CGGGCagGGUCGCCa -3'
miRNA:   3'- uGC-GG---AGCCGGcuGCUCGa-CUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 6430 0.68 0.38856
Target:  5'- gUGCCgaaaaugaCGGCCuGGuCGAGCUucuugccGAUCGCCu -3'
miRNA:   3'- uGCGGa-------GCCGG-CU-GCUCGA-------CUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 6665 0.74 0.15962
Target:  5'- gACGCCgacgCGG-CGAuCGAGgUGAUUGCCg -3'
miRNA:   3'- -UGCGGa---GCCgGCU-GCUCgACUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 7817 0.7 0.264861
Target:  5'- aACGCCUggCGGCCGAgGucgcccggcgcgcaGGCgGAaUCGCCg -3'
miRNA:   3'- -UGCGGA--GCCGGCUgC--------------UCGaCU-AGCGG- -5'
12892 3' -59.7 NC_003387.1 + 8047 0.66 0.463143
Target:  5'- -aGCCUaucuGCuCGACGAGCUGGcgGCCc -3'
miRNA:   3'- ugCGGAgc--CG-GCUGCUCGACUagCGG- -5'
12892 3' -59.7 NC_003387.1 + 8206 0.76 0.114656
Target:  5'- cUGCC-CGGCCGggacagcagcgcguACGAGCUGGgcUCGCCc -3'
miRNA:   3'- uGCGGaGCCGGC--------------UGCUCGACU--AGCGG- -5'
12892 3' -59.7 NC_003387.1 + 8475 0.68 0.354751
Target:  5'- -aGCUaCGGCgGGCGGGCUugaggccGAUCGUCc -3'
miRNA:   3'- ugCGGaGCCGgCUGCUCGA-------CUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 9369 0.71 0.252018
Target:  5'- -aGCCgguggCGGCCGaggcgacccccgagGCGGGCaagacGAUCGCCg -3'
miRNA:   3'- ugCGGa----GCCGGC--------------UGCUCGa----CUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 9441 0.69 0.339435
Target:  5'- uCGCCUCGGCCGccACcGGCUcGUCGaCg -3'
miRNA:   3'- uGCGGAGCCGGC--UGcUCGAcUAGCgG- -5'
12892 3' -59.7 NC_003387.1 + 10076 0.68 0.380771
Target:  5'- uCGCC-CGGCCGcgggaACGGGUcgGGUgCGCCc -3'
miRNA:   3'- uGCGGaGCCGGC-----UGCUCGa-CUA-GCGG- -5'
12892 3' -59.7 NC_003387.1 + 10110 0.66 0.492619
Target:  5'- cGCGcCCUCGGCgCGcuuCG-GCUcGUCGUCg -3'
miRNA:   3'- -UGC-GGAGCCG-GCu--GCuCGAcUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 10240 0.66 0.482694
Target:  5'- gACGCgaUGaGCCGcgccgagcGCGGGCUcaaGGUCGCCc -3'
miRNA:   3'- -UGCGgaGC-CGGC--------UGCUCGA---CUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 10375 0.69 0.308778
Target:  5'- cGCGUCcUGGCCuGCGcGCUGAgCGCCc -3'
miRNA:   3'- -UGCGGaGCCGGcUGCuCGACUaGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.