miRNA display CGI


Results 41 - 60 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12892 3' -59.7 NC_003387.1 + 10458 0.68 0.397337
Target:  5'- cGCGCUgUCGGUCGcCGguggcauGGC-GAUCGCCa -3'
miRNA:   3'- -UGCGG-AGCCGGCuGC-------UCGaCUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 10688 0.68 0.389432
Target:  5'- cCGCCUCGGCgGugGccGCcGGUaucaaGCCg -3'
miRNA:   3'- uGCGGAGCCGgCugCu-CGaCUAg----CGG- -5'
12892 3' -59.7 NC_003387.1 + 10751 0.69 0.350674
Target:  5'- cCGCCgaggCGGCCGugGucgcagccgcgucgaGGCcGAaCGCCg -3'
miRNA:   3'- uGCGGa---GCCGGCugC---------------UCGaCUaGCGG- -5'
12892 3' -59.7 NC_003387.1 + 10922 0.66 0.463143
Target:  5'- -aGaCCgCGGUCGGCGAGCUGGcgaaGCUc -3'
miRNA:   3'- ugC-GGaGCCGGCUGCUCGACUag--CGG- -5'
12892 3' -59.7 NC_003387.1 + 11397 0.65 0.511726
Target:  5'- gGCGCCacgcuggccgcgaUCGGCCccGAgGuGCUG-UCGUCg -3'
miRNA:   3'- -UGCGG-------------AGCCGG--CUgCuCGACuAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 11473 0.7 0.266832
Target:  5'- -gGCCgaucgCGGCCaGCGuGGCgccGAUCGCCg -3'
miRNA:   3'- ugCGGa----GCCGGcUGC-UCGa--CUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 11528 0.74 0.163904
Target:  5'- aGCGCCcCGG-CGGCGAGCUGcagCGCg -3'
miRNA:   3'- -UGCGGaGCCgGCUGCUCGACua-GCGg -5'
12892 3' -59.7 NC_003387.1 + 11692 0.67 0.407136
Target:  5'- uCGCCgCGGUCGuCGGGCUcgcuGUCGCg -3'
miRNA:   3'- uGCGGaGCCGGCuGCUCGAc---UAGCGg -5'
12892 3' -59.7 NC_003387.1 + 12670 0.72 0.207313
Target:  5'- aGCGCC-CGGcCCGACGGG-UGAUCGg- -3'
miRNA:   3'- -UGCGGaGCC-GGCUGCUCgACUAGCgg -5'
12892 3' -59.7 NC_003387.1 + 13234 0.66 0.472868
Target:  5'- gACGCCgagcaGGCCGAC-AGC-GAUCuGCg -3'
miRNA:   3'- -UGCGGag---CCGGCUGcUCGaCUAG-CGg -5'
12892 3' -59.7 NC_003387.1 + 13558 0.73 0.186907
Target:  5'- -gGCCUgGGCagcccgauCGACGggcaggacgucGGCUGGUCGCCg -3'
miRNA:   3'- ugCGGAgCCG--------GCUGC-----------UCGACUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 13644 0.68 0.389432
Target:  5'- -gGCCaccgUCGG-CGGCG-GCUcGGUCGCCg -3'
miRNA:   3'- ugCGG----AGCCgGCUGCuCGA-CUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 13732 0.66 0.472868
Target:  5'- gGCGcCCUCGG-CGAcCGAGCcgc-CGCCg -3'
miRNA:   3'- -UGC-GGAGCCgGCU-GCUCGacuaGCGG- -5'
12892 3' -59.7 NC_003387.1 + 13775 0.66 0.472868
Target:  5'- cCGCCUgGGCCGcgcuCGGGaC-GAaCGCCg -3'
miRNA:   3'- uGCGGAgCCGGCu---GCUC-GaCUaGCGG- -5'
12892 3' -59.7 NC_003387.1 + 13852 0.72 0.212707
Target:  5'- cGCGUCUagcuaaCGGCCGGCGAGC----CGCCg -3'
miRNA:   3'- -UGCGGA------GCCGGCUGCUCGacuaGCGG- -5'
12892 3' -59.7 NC_003387.1 + 14167 0.66 0.472868
Target:  5'- uCGCCg-GGCCGggccGCGGGCgUGAgggCGUCg -3'
miRNA:   3'- uGCGGagCCGGC----UGCUCG-ACUa--GCGG- -5'
12892 3' -59.7 NC_003387.1 + 15173 0.66 0.482694
Target:  5'- cGCGCCgcgaGGUgauCGACGAGgaGGcccgCGCCc -3'
miRNA:   3'- -UGCGGag--CCG---GCUGCUCgaCUa---GCGG- -5'
12892 3' -59.7 NC_003387.1 + 15637 0.7 0.266832
Target:  5'- gGCGCgaaUCGGCugcaccucCGGCGGGCUGAaaggcguugCGCCg -3'
miRNA:   3'- -UGCGg--AGCCG--------GCUGCUCGACUa--------GCGG- -5'
12892 3' -59.7 NC_003387.1 + 16386 0.72 0.218221
Target:  5'- -gGCCa-GGCCGACGAcacGCUGAUgGCg -3'
miRNA:   3'- ugCGGagCCGGCUGCU---CGACUAgCGg -5'
12892 3' -59.7 NC_003387.1 + 16769 0.66 0.462176
Target:  5'- aACGUCUUGGgCGuguucucgucguaAUGcAGCuUGAUCGCCg -3'
miRNA:   3'- -UGCGGAGCCgGC-------------UGC-UCG-ACUAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.