miRNA display CGI


Results 61 - 80 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12892 3' -59.7 NC_003387.1 + 17276 0.66 0.463143
Target:  5'- cUGCCUCGGCCu-CGGccacuuucGCgccGUCGCCg -3'
miRNA:   3'- uGCGGAGCCGGcuGCU--------CGac-UAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 17729 0.67 0.453523
Target:  5'- cACGCCUUGcccuuGUCGGuCGGGCcGAggcUCGCCu -3'
miRNA:   3'- -UGCGGAGC-----CGGCU-GCUCGaCU---AGCGG- -5'
12892 3' -59.7 NC_003387.1 + 17842 0.66 0.463143
Target:  5'- uCGUUUCGGCCGACgccgugauGAGCgguGUgGCCc -3'
miRNA:   3'- uGCGGAGCCGGCUG--------CUCGac-UAgCGG- -5'
12892 3' -59.7 NC_003387.1 + 18204 0.83 0.03376
Target:  5'- uGCGCCUCGGCgacgcgacgacCGGCGAcCUGGUCGCCc -3'
miRNA:   3'- -UGCGGAGCCG-----------GCUGCUcGACUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 18296 0.67 0.444014
Target:  5'- aGCGCCgaccCGGCCG-CGGcGgUGG-CGCCc -3'
miRNA:   3'- -UGCGGa---GCCGGCuGCU-CgACUaGCGG- -5'
12892 3' -59.7 NC_003387.1 + 18369 0.7 0.29426
Target:  5'- cCGCCgCGGCCGGguCGGcGCUGGUCGa- -3'
miRNA:   3'- uGCGGaGCCGGCU--GCU-CGACUAGCgg -5'
12892 3' -59.7 NC_003387.1 + 18929 0.72 0.212707
Target:  5'- aGCGCCUCGGgCGACGA-CaGGUCgauGCCc -3'
miRNA:   3'- -UGCGGAGCCgGCUGCUcGaCUAG---CGG- -5'
12892 3' -59.7 NC_003387.1 + 19230 0.66 0.482694
Target:  5'- cGCGcCCUCGacagcGUCGACGAGCcac-CGCCc -3'
miRNA:   3'- -UGC-GGAGC-----CGGCUGCUCGacuaGCGG- -5'
12892 3' -59.7 NC_003387.1 + 19344 0.68 0.389432
Target:  5'- gGCGagaaCCU-GGCCgGGCGGGCUcuGGUUGCCa -3'
miRNA:   3'- -UGC----GGAgCCGG-CUGCUCGA--CUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 19569 0.66 0.472868
Target:  5'- uCGagUCGGCUGGCGAGcCUGcUCGgCg -3'
miRNA:   3'- uGCggAGCCGGCUGCUC-GACuAGCgG- -5'
12892 3' -59.7 NC_003387.1 + 20249 0.67 0.453523
Target:  5'- gGCGCCgucCGG-UGGCGAGCcgacGGUgGCCu -3'
miRNA:   3'- -UGCGGa--GCCgGCUGCUCGa---CUAgCGG- -5'
12892 3' -59.7 NC_003387.1 + 21016 0.66 0.472868
Target:  5'- aGCGCCg-GGCUGuCaacauGGCUGAccgUCGCCa -3'
miRNA:   3'- -UGCGGagCCGGCuGc----UCGACU---AGCGG- -5'
12892 3' -59.7 NC_003387.1 + 21415 0.66 0.492619
Target:  5'- aACGCCcccggCGGcCCGGCGcagcagcuacGGCUGGUCaacuaacccgGCCc -3'
miRNA:   3'- -UGCGGa----GCC-GGCUGC----------UCGACUAG----------CGG- -5'
12892 3' -59.7 NC_003387.1 + 21640 0.72 0.196879
Target:  5'- cGCGCCUgGGCCacggucugcacGACGAcGCgggcGUCGCCg -3'
miRNA:   3'- -UGCGGAgCCGG-----------CUGCU-CGac--UAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 21689 0.71 0.260306
Target:  5'- gACGCCcUGGCCGccucgGCGAGCgcgGcccgCGCCg -3'
miRNA:   3'- -UGCGGaGCCGGC-----UGCUCGa--Cua--GCGG- -5'
12892 3' -59.7 NC_003387.1 + 21720 0.83 0.036768
Target:  5'- cCGCCgCGGUCGACGAGCUGA-CGCUc -3'
miRNA:   3'- uGCGGaGCCGGCUGCUCGACUaGCGG- -5'
12892 3' -59.7 NC_003387.1 + 21798 0.66 0.492619
Target:  5'- cCGCggCGGCCagcucGGCGAGC-GA-CGCCg -3'
miRNA:   3'- uGCGgaGCCGG-----CUGCUCGaCUaGCGG- -5'
12892 3' -59.7 NC_003387.1 + 21808 0.66 0.482694
Target:  5'- aGCGCCUCGGCgacgauuuccaCGaccaggucggcGCGGGCcGcgcUCGCCg -3'
miRNA:   3'- -UGCGGAGCCG-----------GC-----------UGCUCGaCu--AGCGG- -5'
12892 3' -59.7 NC_003387.1 + 22185 0.68 0.398221
Target:  5'- cCGCCagGGCCGcCGGGgaUGG-CGCCg -3'
miRNA:   3'- uGCGGagCCGGCuGCUCg-ACUaGCGG- -5'
12892 3' -59.7 NC_003387.1 + 22236 0.72 0.204133
Target:  5'- cCGCCUgGGCCGcUGAGCgUGccgccgccagugaacGUCGCCg -3'
miRNA:   3'- uGCGGAgCCGGCuGCUCG-AC---------------UAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.