miRNA display CGI


Results 81 - 100 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12892 3' -59.7 NC_003387.1 + 22603 0.68 0.385952
Target:  5'- aGC-CCUCGGCCugggccagggucgcGGCGGGCaUGAUccauucgCGCCa -3'
miRNA:   3'- -UGcGGAGCCGG--------------CUGCUCG-ACUA-------GCGG- -5'
12892 3' -59.7 NC_003387.1 + 22920 0.66 0.492619
Target:  5'- uGCGCCUUGcgcGCCGAuCGcguuGGC-GAUCGCg -3'
miRNA:   3'- -UGCGGAGC---CGGCU-GC----UCGaCUAGCGg -5'
12892 3' -59.7 NC_003387.1 + 23379 0.69 0.347436
Target:  5'- -aGCUgauUCGggucGCCGACGAGCUGAacaUGCCc -3'
miRNA:   3'- ugCGG---AGC----CGGCUGCUCGACUa--GCGG- -5'
12892 3' -59.7 NC_003387.1 + 23824 0.7 0.287203
Target:  5'- uACGCCUgCGGgacgcCCGACc-GCUgGAUCGCCu -3'
miRNA:   3'- -UGCGGA-GCC-----GGCUGcuCGA-CUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 23889 0.74 0.151354
Target:  5'- -gGCU--GGCCGACGuGCUGcgCGCCg -3'
miRNA:   3'- ugCGGagCCGGCUGCuCGACuaGCGG- -5'
12892 3' -59.7 NC_003387.1 + 24490 0.67 0.407136
Target:  5'- cGCGUCcUGGCCGACcGGCgguUCGUCa -3'
miRNA:   3'- -UGCGGaGCCGGCUGcUCGacuAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 24578 0.67 0.425337
Target:  5'- -gGCUgCGGCUGACGAaccGCcGGUCgGCCa -3'
miRNA:   3'- ugCGGaGCCGGCUGCU---CGaCUAG-CGG- -5'
12892 3' -59.7 NC_003387.1 + 24623 0.67 0.425337
Target:  5'- cGCGCCUgGGCgaccCGACGcaccucgcccuGCUGcgcgagGUCGCCa -3'
miRNA:   3'- -UGCGGAgCCG----GCUGCu----------CGAC------UAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 24721 0.66 0.492619
Target:  5'- gGCGaCCUCGcGCagcagGGCGAgguGCgucgGGUCGCCc -3'
miRNA:   3'- -UGC-GGAGC-CGg----CUGCU---CGa---CUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 24840 0.66 0.502636
Target:  5'- uGCGCUgucugCGGCCGgguGCGugguGGCUGGcUCGaCCu -3'
miRNA:   3'- -UGCGGa----GCCGGC---UGC----UCGACU-AGC-GG- -5'
12892 3' -59.7 NC_003387.1 + 24885 0.67 0.434617
Target:  5'- -gGCCUUGaCCGGCG-GCgUGggCGCCu -3'
miRNA:   3'- ugCGGAGCcGGCUGCuCG-ACuaGCGG- -5'
12892 3' -59.7 NC_003387.1 + 25482 0.66 0.479736
Target:  5'- gGCGCauccugUCGGgCGACcugcagcgguucaaGuccaAGCUGAUCGCCg -3'
miRNA:   3'- -UGCGg-----AGCCgGCUG--------------C----UCGACUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 25860 0.78 0.07437
Target:  5'- cCGCCgagCGGCCGAgaauguCGAGCgGGUUGCCg -3'
miRNA:   3'- uGCGGa--GCCGGCU------GCUCGaCUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 25893 0.69 0.316239
Target:  5'- cCGCC-CaGGCCGcCGAGCaGGcCGCCa -3'
miRNA:   3'- uGCGGaG-CCGGCuGCUCGaCUaGCGG- -5'
12892 3' -59.7 NC_003387.1 + 25988 0.66 0.482694
Target:  5'- cGCGCUggUGGUCGGUGAGCg---CGCCg -3'
miRNA:   3'- -UGCGGa-GCCGGCUGCUCGacuaGCGG- -5'
12892 3' -59.7 NC_003387.1 + 26120 0.68 0.37224
Target:  5'- uGCGCCa-GGUCGGCGcGUccGUCGCCg -3'
miRNA:   3'- -UGCGGagCCGGCUGCuCGacUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 26609 0.74 0.143478
Target:  5'- aACGCCUCGG-CGGCGAaGCUGGaCGgCa -3'
miRNA:   3'- -UGCGGAGCCgGCUGCU-CGACUaGCgG- -5'
12892 3' -59.7 NC_003387.1 + 26710 0.72 0.202037
Target:  5'- gACGCCgUCGuGCgCGgcGCGAGCUGgAUCGCg -3'
miRNA:   3'- -UGCGG-AGC-CG-GC--UGCUCGAC-UAGCGg -5'
12892 3' -59.7 NC_003387.1 + 27220 0.69 0.347436
Target:  5'- gACGCgCUCGGauuucUCGAUGAGCUGcccgGCCa -3'
miRNA:   3'- -UGCG-GAGCC-----GGCUGCUCGACuag-CGG- -5'
12892 3' -59.7 NC_003387.1 + 27289 0.7 0.28028
Target:  5'- aACGCCgcacuggCGGCCcuugaGAGCcgcgucgccgUGAUCGCCg -3'
miRNA:   3'- -UGCGGa------GCCGGcug--CUCG----------ACUAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.