Results 101 - 120 of 200 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12892 | 3' | -59.7 | NC_003387.1 | + | 27560 | 0.71 | 0.229616 |
Target: 5'- cCGCCUCgGGCCGcugacACGAGCcccGAUCGgCu -3' miRNA: 3'- uGCGGAG-CCGGC-----UGCUCGa--CUAGCgG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 27893 | 0.66 | 0.499621 |
Target: 5'- -aGCC-CGGCCagccgcccgaguacGcCGAGCUGcugCGCCa -3' miRNA: 3'- ugCGGaGCCGG--------------CuGCUCGACua-GCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 28020 | 0.66 | 0.482694 |
Target: 5'- gACGagcgCGGCaagccgauccuCGGCGAGCUGAcgaccaaguggcUCGCCu -3' miRNA: 3'- -UGCgga-GCCG-----------GCUGCUCGACU------------AGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 28229 | 0.72 | 0.218221 |
Target: 5'- cCGCgaCGGCuCGAcCGAGCaGAUCGUCg -3' miRNA: 3'- uGCGgaGCCG-GCU-GCUCGaCUAGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 28291 | 0.71 | 0.253911 |
Target: 5'- -aGCCgucgCGGCUGcgcuugcCGAGCUGcagGUCGCCg -3' miRNA: 3'- ugCGGa---GCCGGCu------GCUCGAC---UAGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 28381 | 0.66 | 0.472868 |
Target: 5'- gGCGCaacucgUGGCUGACGcaGGaaacGAUCGCCg -3' miRNA: 3'- -UGCGga----GCCGGCUGC--UCga--CUAGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 29471 | 0.74 | 0.155437 |
Target: 5'- uGCGCC-CGGCgGGCGAGaucgaGGUCGUCa -3' miRNA: 3'- -UGCGGaGCCGgCUGCUCga---CUAGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 29728 | 0.69 | 0.339435 |
Target: 5'- -gGCCgacgaCGGCagcuacgcgGGCGAGCUGGaCGCCg -3' miRNA: 3'- ugCGGa----GCCGg--------CUGCUCGACUaGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 29870 | 0.67 | 0.453523 |
Target: 5'- gACGCUaguccucgaUCGGCauGCGgucacgccguAGCUGAUCGUCa -3' miRNA: 3'- -UGCGG---------AGCCGgcUGC----------UCGACUAGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 30181 | 0.69 | 0.347436 |
Target: 5'- uCGCCUCGGgcaaggagcagUCGcCGAGCcGGUaCGCCg -3' miRNA: 3'- uGCGGAGCC-----------GGCuGCUCGaCUA-GCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 30297 | 0.67 | 0.444014 |
Target: 5'- cGCGCCUgGGaCGACGcgcauuaccagGGCUGGcggCGCUu -3' miRNA: 3'- -UGCGGAgCCgGCUGC-----------UCGACUa--GCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 30502 | 0.66 | 0.463143 |
Target: 5'- cCGCCUCGGCCucgguuucacccGAC-AGCUcGGgcaGCCa -3' miRNA: 3'- uGCGGAGCCGG------------CUGcUCGA-CUag-CGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 30563 | 0.66 | 0.469939 |
Target: 5'- cCGCCgCGGCCGguacgcgccgugccGCGAGUgcgGGUaCGUCg -3' miRNA: 3'- uGCGGaGCCGGC--------------UGCUCGa--CUA-GCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 32159 | 0.75 | 0.128842 |
Target: 5'- cCGCCUgcaGGCacagauuGACGAGCUGAcCGCCg -3' miRNA: 3'- uGCGGAg--CCGg------CUGCUCGACUaGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 32225 | 0.76 | 0.113723 |
Target: 5'- cGCGCUgcgCGaGCgCGACGAGCUGGccgaccgccuggccgUCGCCg -3' miRNA: 3'- -UGCGGa--GC-CG-GCUGCUCGACU---------------AGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 32321 | 0.7 | 0.29426 |
Target: 5'- gAUGCCcgacaUGGaCCGcuGCG-GCUGAUCGCCg -3' miRNA: 3'- -UGCGGa----GCC-GGC--UGCuCGACUAGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 32328 | 0.67 | 0.416176 |
Target: 5'- -gGCCUCGG-CGACGgccaGGC-GGUCgGCCa -3' miRNA: 3'- ugCGGAGCCgGCUGC----UCGaCUAG-CGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 32659 | 0.66 | 0.463143 |
Target: 5'- aACGCUcacGCaCGcCGAGCUGAaccUCGCCg -3' miRNA: 3'- -UGCGGagcCG-GCuGCUCGACU---AGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 33071 | 0.67 | 0.434617 |
Target: 5'- cGCGCCaaGcGCCG-CGAGCguaaccgcGUCGCCc -3' miRNA: 3'- -UGCGGagC-CGGCuGCUCGac------UAGCGG- -5' |
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12892 | 3' | -59.7 | NC_003387.1 | + | 33478 | 0.68 | 0.37224 |
Target: 5'- uCGCCgaggCGGUCGGCGcccGC-GAUCGCg -3' miRNA: 3'- uGCGGa---GCCGGCUGCu--CGaCUAGCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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