miRNA display CGI


Results 1 - 20 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12892 3' -59.7 NC_003387.1 + 52610 0.69 0.339435
Target:  5'- gACGCC-CGGCCGccagcucgGCG-GCUuGUCGCUc -3'
miRNA:   3'- -UGCGGaGCCGGC--------UGCuCGAcUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 52090 0.69 0.316239
Target:  5'- uCGCCUCgucgucgagGGCCGAcagguCGGGCaGGUgCGCCa -3'
miRNA:   3'- uGCGGAG---------CCGGCU-----GCUCGaCUA-GCGG- -5'
12892 3' -59.7 NC_003387.1 + 51376 0.77 0.095432
Target:  5'- gGCGCCgccGCCGACGAGCUGGcagggcucggggUCGUCg -3'
miRNA:   3'- -UGCGGagcCGGCUGCUCGACU------------AGCGG- -5'
12892 3' -59.7 NC_003387.1 + 51319 0.66 0.482694
Target:  5'- gGCGCCUCGcacaacuucgaGCgCGAcccCGAcccGCUGAgCGCCg -3'
miRNA:   3'- -UGCGGAGC-----------CG-GCU---GCU---CGACUaGCGG- -5'
12892 3' -59.7 NC_003387.1 + 51290 0.71 0.262901
Target:  5'- -gGCCgCGGCCGACGugcaggcucAGCaccucggugccgagGAUCGCCa -3'
miRNA:   3'- ugCGGaGCCGGCUGC---------UCGa-------------CUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 51122 0.66 0.482694
Target:  5'- cGCGCC-CGGCCGAacaugccaGGGCg---CGUCu -3'
miRNA:   3'- -UGCGGaGCCGGCUg-------CUCGacuaGCGG- -5'
12892 3' -59.7 NC_003387.1 + 50392 0.66 0.472868
Target:  5'- -gGCCUCGacaccGCCGAgcuguacguCGGGCggcaGAUCGUCg -3'
miRNA:   3'- ugCGGAGC-----CGGCU---------GCUCGa---CUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 50239 0.71 0.231954
Target:  5'- gGCGCCUaccggaucgaggaggUGGCCGACGuGCgcaccgaggUGAUCGUg -3'
miRNA:   3'- -UGCGGA---------------GCCGGCUGCuCG---------ACUAGCGg -5'
12892 3' -59.7 NC_003387.1 + 50105 0.71 0.229616
Target:  5'- uCGCCgaGGCCcGCGAGCgccuggucacGAUCGCCg -3'
miRNA:   3'- uGCGGagCCGGcUGCUCGa---------CUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 49889 0.67 0.434617
Target:  5'- aAUGCCggCGagaGCCGAuuugugcgcUGAGCUGcgcGUCGCCg -3'
miRNA:   3'- -UGCGGa-GC---CGGCU---------GCUCGAC---UAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 49309 0.71 0.229616
Target:  5'- cACGCCgagggcaCGGCCc-CGAGCaUGAUCGCg -3'
miRNA:   3'- -UGCGGa------GCCGGcuGCUCG-ACUAGCGg -5'
12892 3' -59.7 NC_003387.1 + 49152 0.71 0.247646
Target:  5'- uACGCCUgCGcGCCG-CGAGCcugcccggUGAgCGCCa -3'
miRNA:   3'- -UGCGGA-GC-CGGCuGCUCG--------ACUaGCGG- -5'
12892 3' -59.7 NC_003387.1 + 48863 0.76 0.112489
Target:  5'- cCGCCgCGGCgaucagCGGCGAGCUGGcugCGCCg -3'
miRNA:   3'- uGCGGaGCCG------GCUGCUCGACUa--GCGG- -5'
12892 3' -59.7 NC_003387.1 + 48763 0.68 0.39469
Target:  5'- cACGCacgCGGUgcuCGGCGcagccagcucgccGCUGAUCGCCg -3'
miRNA:   3'- -UGCGga-GCCG---GCUGCu------------CGACUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 48686 0.7 0.271479
Target:  5'- uCGCCccaggaGGCCGccacGCGguucuuuugggccuGGCUGAUCGCCg -3'
miRNA:   3'- uGCGGag----CCGGC----UGC--------------UCGACUAGCGG- -5'
12892 3' -59.7 NC_003387.1 + 48315 0.7 0.29426
Target:  5'- -gGCCgCGGCCGAcCGGGCgcgacacGAUCGUg -3'
miRNA:   3'- ugCGGaGCCGGCU-GCUCGa------CUAGCGg -5'
12892 3' -59.7 NC_003387.1 + 48218 0.69 0.331568
Target:  5'- -gGCCUCGG-UGGCGcGCUGcgCGCg -3'
miRNA:   3'- ugCGGAGCCgGCUGCuCGACuaGCGg -5'
12892 3' -59.7 NC_003387.1 + 47948 0.69 0.308778
Target:  5'- gACGCCgugugGGCCGcgaagcaccGCGAGCUGggCGgCa -3'
miRNA:   3'- -UGCGGag---CCGGC---------UGCUCGACuaGCgG- -5'
12892 3' -59.7 NC_003387.1 + 47923 0.73 0.191836
Target:  5'- uGCGCCauaagCGGUuuCGACaGGCUGAUCuGCCg -3'
miRNA:   3'- -UGCGGa----GCCG--GCUGcUCGACUAG-CGG- -5'
12892 3' -59.7 NC_003387.1 + 47630 0.78 0.083116
Target:  5'- cACGCgagugCGGCCGACGAGCacGAccUCGCCg -3'
miRNA:   3'- -UGCGga---GCCGGCUGCUCGa-CU--AGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.